Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   V6U62_RS07875 Genome accession   NZ_CP145860
Coordinates   1724677..1726482 (-) Length   601 a.a.
NCBI ID   WP_272125982.1    Uniprot ID   -
Organism   Streptococcus salivarius strain KSS2     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 1719677..1731482
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V6U62_RS07850 (V6U62_07830) - 1720438..1720923 (-) 486 WP_247915639.1 LURP-one-related/scramblase family protein -
  V6U62_RS07855 (V6U62_07835) - 1721056..1721193 (-) 138 WP_153300621.1 hypothetical protein -
  V6U62_RS07860 (V6U62_07840) - 1721262..1722404 (-) 1143 WP_254735011.1 peptidyl-prolyl cis-trans isomerase -
  V6U62_RS07865 (V6U62_07845) - 1722466..1723173 (-) 708 WP_151404508.1 O-methyltransferase -
  V6U62_RS07870 (V6U62_07850) - 1723245..1724465 (-) 1221 WP_254735012.1 OFA family MFS transporter -
  V6U62_RS07875 (V6U62_07855) pepF 1724677..1726482 (-) 1806 WP_272125982.1 oligoendopeptidase F Regulator
  V6U62_RS07880 (V6U62_07860) - 1726493..1727452 (-) 960 WP_272125980.1 competence protein CoiA -
  V6U62_RS07885 (V6U62_07865) - 1728753..1730690 (-) 1938 WP_272125978.1 GbpC/Spa domain-containing protein -

Sequence

Protein


Download         Length: 601 a.a.        Molecular weight: 69028.06 Da        Isoelectric Point: 4.5388

>NTDB_id=940326 V6U62_RS07875 WP_272125982.1 1724677..1726482(-) (pepF) [Streptococcus salivarius strain KSS2]
MSDNRTHLEEKYTWDLTTIFATDADWETEYESTVQDLKKASAYVGHLLDSAKNLLGATELYMSLMRRLEKIYVYASMKND
QDTTVGLYQEYQAKASNLYSQLSEAFAYFEPEFMALDAEKLTAFKAEEPELGLYDHYFERLLANKDHVLSQEAEELLAAA
GDIFNGPTDTFNVLDNADILFPWVSDGQGDVVELTHGNFITLMESKDRDIRKGAYEAMYGTYEQFQHTYAQTLQGVVKVH
NYQAKVRHYNSARHAALAANFIPESVYDSLLESVNKHLPLLHRYLDLRKKVLGLDELKMYDVYTPLSETETALTYEESLK
KAEEVLAIFGEEYSKGVHAAFTERWIDVHPNKGKRSGAYSGGAYDTNAFMLLNWQDTLDNLFTLVHETGHSLHSTFTRQT
QPYVYGDYPIFLAEIASTTNENILTETLLKEVKDDKTRFAILNHYLDGFKGTVFRQTQFAEFEHAIHEADASGQILTADF
MNKLYADLNEKYYNLKAEDNYEIQFEWERIPHFYMNYYVYQYATGFAAASYLAEKIVHGTEEDKEAYLTYLKAGSSEYPL
EVIKKAGVDMTNTDYLDAAFKVFEDRLVELEDLVEKGVHLS

Nucleotide


Download         Length: 1806 bp        

>NTDB_id=940326 V6U62_RS07875 WP_272125982.1 1724677..1726482(-) (pepF) [Streptococcus salivarius strain KSS2]
ATGTCAGACAATCGTACTCATTTAGAAGAAAAATACACATGGGATTTGACGACCATTTTTGCGACAGATGCAGATTGGGA
GACCGAATATGAAAGCACTGTTCAGGATTTGAAGAAGGCTAGTGCTTATGTAGGTCATCTCTTGGATTCTGCTAAGAACT
TGCTTGGGGCAACAGAACTTTATATGAGCCTTATGCGTCGCTTGGAGAAAATCTATGTCTATGCGTCAATGAAAAATGAC
CAAGACACAACAGTAGGTCTGTATCAAGAGTACCAAGCAAAGGCCTCAAACCTTTATTCACAGTTGAGTGAAGCCTTTGC
TTACTTTGAGCCTGAATTTATGGCCTTGGATGCTGAAAAGTTAACAGCCTTCAAAGCAGAGGAACCAGAGCTTGGACTTT
ATGACCACTATTTCGAACGTCTCTTGGCAAACAAGGACCACGTTCTTTCTCAAGAAGCGGAAGAACTCTTGGCAGCAGCC
GGTGATATTTTCAACGGTCCAACGGATACCTTTAATGTCTTGGATAATGCTGATATCCTCTTCCCATGGGTATCAGATGG
CCAAGGGGATGTGGTTGAGTTGACACATGGTAACTTTATCACCCTCATGGAATCTAAGGACCGTGACATTCGTAAGGGTG
CTTATGAAGCGATGTACGGTACTTACGAGCAGTTCCAACATACCTATGCACAAACACTTCAAGGCGTTGTTAAGGTTCAC
AATTACCAAGCCAAAGTTCGTCACTATAATTCAGCACGTCATGCAGCACTTGCGGCTAACTTTATTCCAGAGAGTGTTTA
TGACTCACTCTTGGAATCAGTGAACAAGCATTTGCCACTTTTGCACCGTTACCTTGATTTGCGTAAGAAGGTCTTGGGAC
TTGATGAGCTTAAGATGTATGACGTCTACACACCACTTTCTGAGACTGAAACTGCTCTTACTTATGAAGAATCCCTCAAG
AAAGCAGAAGAAGTCTTGGCAATCTTTGGTGAAGAGTATAGTAAAGGGGTTCATGCAGCCTTTACGGAACGTTGGATTGA
CGTTCACCCTAACAAAGGAAAACGCTCAGGTGCCTACTCAGGTGGTGCCTATGATACAAATGCTTTCATGCTTTTGAACT
GGCAAGACACTCTGGACAATCTCTTTACCTTGGTTCACGAGACCGGCCACAGCTTGCATTCAACGTTCACACGTCAGACA
CAACCATATGTTTATGGAGATTACCCAATCTTCTTGGCGGAAATTGCGTCTACAACTAATGAAAATATCTTGACAGAAAC
ACTTCTTAAAGAAGTTAAAGATGACAAGACACGTTTTGCTATTCTTAACCACTATTTGGATGGTTTCAAGGGAACTGTCT
TCCGTCAAACCCAATTTGCTGAGTTTGAGCATGCTATCCATGAAGCAGATGCATCTGGTCAAATCTTGACAGCCGACTTC
ATGAATAAACTTTACGCAGACCTCAATGAGAAATACTATAACCTTAAAGCTGAAGATAACTACGAAATTCAGTTTGAGTG
GGAACGTATTCCGCATTTCTACATGAATTACTATGTCTACCAATACGCTACAGGGTTTGCAGCAGCAAGCTACTTGGCTG
AAAAAATTGTTCACGGTACTGAGGAGGATAAAGAAGCTTACCTTACTTACCTTAAGGCGGGAAGCTCAGAATATCCTTTG
GAAGTCATCAAGAAAGCTGGTGTTGATATGACCAATACCGACTACTTGGATGCTGCCTTCAAAGTTTTTGAAGACCGTCT
CGTTGAATTGGAAGACTTGGTTGAAAAAGGTGTTCACCTTTCTTAA

Domains

Predicted by InterproScan.

Peptidase family M3 (Peptidase_M3)

(202-581)

Oligopeptidase F (Peptidase_M3_N)

(112-181)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

98.336

100

0.983