Detailed information    

insolico Bioinformatically predicted

Overview

Name   treR   Type   Regulator
Locus tag   V6U62_RS00655 Genome accession   NZ_CP145860
Coordinates   113950..114660 (-) Length   236 a.a.
NCBI ID   WP_175061547.1    Uniprot ID   A0AB35ITA6
Organism   Streptococcus salivarius strain KSS2     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 108950..119660
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V6U62_RS00620 (V6U62_00620) rplQ 109054..109440 (+) 387 WP_002885709.1 50S ribosomal protein L17 -
  V6U62_RS00625 (V6U62_00625) - 109691..110986 (+) 1296 WP_410535078.1 gamma-glutamylcysteine synthetase -
  V6U62_RS00635 (V6U62_00635) - 111410..112291 (+) 882 WP_002887043.1 class II fructose-bisphosphate aldolase -
  V6U62_RS00640 (V6U62_00640) - 112593..112949 (+) 357 WP_410535076.1 hypothetical protein -
  V6U62_RS00645 (V6U62_00645) - 112982..113320 (+) 339 WP_155164814.1 hypothetical protein -
  V6U62_RS00650 (V6U62_00650) - 113336..113896 (+) 561 WP_003092046.1 TIGR01440 family protein -
  V6U62_RS00655 (V6U62_00655) treR 113950..114660 (-) 711 WP_175061547.1 trehalose operon repressor Regulator
  V6U62_RS00660 (V6U62_00660) treP 114777..116198 (+) 1422 Protein_125 PTS system trehalose-specific EIIBC component -
  V6U62_RS00665 - 116331..116726 (+) 396 Protein_126 PTS glucose transporter subunit IIA -
  V6U62_RS00670 (V6U62_00665) treC 116781..118406 (+) 1626 WP_195914741.1 alpha,alpha-phosphotrehalase -

Sequence

Protein


Download         Length: 236 a.a.        Molecular weight: 27341.97 Da        Isoelectric Point: 6.8431

>NTDB_id=940283 V6U62_RS00655 WP_175061547.1 113950..114660(-) (treR) [Streptococcus salivarius strain KSS2]
MKKYQIIYKDLEKAIHEQKYQVGDFLPTEQELVQSYQVSRDTIRKALSLLVEEGLVKKIHGSGSQVINQEQINFPVSDLT
SYQELIEQQGLNSQTNVISLDKIIVDSKLSERTGFSNSRQVWRVVRQRVVDSCASVIDIDYLDASLVPQLNRSIAEYSIY
DYIENQINLSISHAFKEITIDNATDQDKILIDLGKDQHVVCVRSKVYLNNGKQFQFTESRHKLEKFKFVDYAKRHH

Nucleotide


Download         Length: 711 bp        

>NTDB_id=940283 V6U62_RS00655 WP_175061547.1 113950..114660(-) (treR) [Streptococcus salivarius strain KSS2]
ATGAAAAAATATCAGATTATTTATAAGGATTTAGAAAAAGCTATCCATGAGCAAAAGTATCAAGTGGGAGACTTTCTCCC
CACCGAGCAAGAACTGGTTCAATCTTACCAGGTTAGTAGAGATACTATACGAAAGGCATTAAGCTTACTCGTTGAAGAAG
GCTTGGTCAAAAAAATTCATGGCTCTGGCTCTCAGGTTATTAACCAGGAACAAATCAACTTTCCTGTGTCTGACCTTACT
AGTTACCAAGAACTAATAGAACAACAAGGCCTTAATTCGCAAACCAACGTTATTTCTCTGGATAAAATCATCGTTGATTC
CAAACTCTCAGAAAGAACTGGTTTTTCTAATAGCCGACAGGTCTGGCGTGTTGTTCGTCAAAGAGTCGTTGATAGCTGTG
CCTCTGTTATAGATATTGATTACCTAGATGCAAGCCTTGTTCCTCAACTAAACCGTAGCATTGCTGAATACTCTATTTAC
GACTACATTGAGAATCAGATCAACCTTAGCATTTCCCACGCCTTTAAAGAAATCACTATCGATAATGCTACCGATCAGGA
TAAGATTCTTATCGACCTAGGTAAGGACCAGCACGTCGTCTGTGTCCGTTCAAAAGTTTATTTAAACAATGGAAAACAGT
TCCAATTTACGGAAAGTCGCCACAAACTTGAAAAATTCAAATTTGTTGATTATGCCAAGCGCCATCATTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, gntR family (GntR)

(4-66)

UTRA domain (UTRA)

(88-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  treR Streptococcus mutans UA159

60.426

99.576

0.602