Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   V6T26_RS07985 Genome accession   NZ_CP145858
Coordinates   1733828..1735633 (-) Length   601 a.a.
NCBI ID   WP_410541199.1    Uniprot ID   -
Organism   Streptococcus salivarius strain KSS11     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 1728828..1740633
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V6T26_RS07960 (V6T26_07955) - 1729584..1730069 (-) 486 WP_347095757.1 LURP-one-related/scramblase family protein -
  V6T26_RS07965 (V6T26_07960) - 1730202..1730339 (-) 138 WP_156430783.1 hypothetical protein -
  V6T26_RS07970 (V6T26_07965) - 1730408..1731550 (-) 1143 WP_198463436.1 peptidyl-prolyl cis-trans isomerase -
  V6T26_RS07975 (V6T26_07970) - 1731612..1732319 (-) 708 WP_014633986.1 O-methyltransferase -
  V6T26_RS07980 (V6T26_07975) - 1732391..1733611 (-) 1221 WP_060973368.1 OFA family MFS transporter -
  V6T26_RS07985 (V6T26_07980) pepF 1733828..1735633 (-) 1806 WP_410541199.1 oligoendopeptidase F Regulator
  V6T26_RS07990 (V6T26_07985) - 1735644..1736603 (-) 960 WP_410541200.1 competence protein CoiA -
  V6T26_RS07995 (V6T26_07990) - 1737907..1739844 (-) 1938 WP_410541201.1 GbpC/Spa domain-containing protein -

Sequence

Protein


Download         Length: 601 a.a.        Molecular weight: 68956.00 Da        Isoelectric Point: 4.5570

>NTDB_id=940260 V6T26_RS07985 WP_410541199.1 1733828..1735633(-) (pepF) [Streptococcus salivarius strain KSS11]
MSDNRTHLEEKYTWDLTTIFATDADWETEYESTVQDLKKASAYAGHLLDSAKNLLEATELYMSLMRRLEKIYVYASMKND
QDTTVGLYQEYQAKASNLYSQLSEAFAYFEPEFMALDAEKLTAFKTEEPGLGLYDHYFERLLANKDHVLSQEAEELLAAA
GDIFNGPTDTFNVLDNADILFPWVSDGQGDVVELTHGNFITLMEAKDRDIRKGAYEAMYGTYEQFQHTYAQTLQGVVKVH
NYQAKVRHYNSARHAALAANFIPESVYDSLLESVNKHLPLLHRYLDLRKKVLGLDELKMYDVYTPLSETETALTYEESLK
KAEEVLAIFGEEYSKGVHAAFTERWIDVHPNKGKRSGAYSGGAYDTNAFMLLNWQDTLDNLFTLVHETGHSLHSTFTRQT
QPYVYGDYPIFLAEIASTTNENILTETLLKEVKDDKTRFAILNHYLDGFKGTVFRQTQFAEFEHAIHEADASGQILTADF
MNKLYADLNEKYYNLKAEDNYEIQFEWERIPHFYMNYYVYQYATGFAAASYLAEKIVHGTEEDKEAYLTYLKAGSSDYPL
EVIKKAGVDMTNTDYLDAAFKVFEDRLVELEALVEKGVHLS

Nucleotide


Download         Length: 1806 bp        

>NTDB_id=940260 V6T26_RS07985 WP_410541199.1 1733828..1735633(-) (pepF) [Streptococcus salivarius strain KSS11]
ATGTCAGACAATCGTACTCATTTAGAAGAAAAATACACATGGGATTTGACGACCATTTTCGCGACAGATGCAGATTGGGA
AACCGAATATGAAAGCACTGTTCAGGATTTGAAGAAGGCTAGTGCTTATGCAGGTCATCTCTTGGATTCTGCTAAGAACT
TGCTTGAGGCAACAGAACTTTATATGAGCCTTATGCGTCGCTTGGAGAAAATCTATGTCTATGCGTCAATGAAAAATGAC
CAAGACACAACAGTAGGTCTGTATCAAGAGTACCAAGCAAAGGCCTCAAACCTTTATTCACAGTTGAGTGAAGCCTTTGC
TTACTTTGAGCCTGAATTTATGGCCTTGGATGCTGAAAAGTTAACAGCCTTCAAAACAGAGGAACCAGGGCTTGGACTTT
ATGACCACTATTTCGAACGCCTCTTGGCAAACAAGGACCACGTTCTTTCTCAAGAAGCGGAAGAGCTCTTGGCAGCAGCC
GGTGATATTTTCAACGGTCCAACGGATACCTTTAATGTCTTGGATAATGCTGATATCCTCTTCCCATGGGTATCAGATGG
CCAAGGGGATGTGGTTGAGTTGACACATGGTAACTTTATCACCCTCATGGAAGCTAAGGACCGTGATATTCGTAAGGGTG
CTTATGAAGCGATGTACGGTACTTACGAGCAGTTCCAACATACCTATGCACAAACACTTCAAGGCGTTGTTAAGGTTCAC
AATTACCAAGCCAAAGTTCGTCACTATAATTCGGCACGTCATGCAGCACTTGCGGCCAATTTTATTCCAGAGAGTGTTTA
TGACTCACTCTTGGAATCAGTGAATAAGCATTTGCCACTTTTGCACCGTTACCTTGATTTGCGTAAGAAGGTCTTGGGGC
TTGACGAGCTTAAGATGTATGACGTCTACACACCACTTTCTGAGACTGAAACTGCTCTTACTTATGAAGAATCCCTCAAG
AAAGCAGAAGAAGTCTTGGCAATCTTTGGTGAAGAGTATAGTAAAGGGGTTCATGCAGCCTTTACGGAACGTTGGATTGA
CGTTCACCCTAACAAAGGAAAACGCTCAGGTGCCTACTCAGGTGGTGCCTATGATACAAATGCTTTCATGCTTTTGAACT
GGCAAGATACTCTGGACAATCTCTTTACCTTGGTTCACGAGACTGGCCACAGCTTGCATTCAACGTTCACACGTCAGACA
CAACCATATGTTTATGGAGATTACCCAATCTTCTTGGCGGAAATTGCGTCTACAACTAATGAAAATATCTTGACAGAAAC
GCTTCTTAAAGAGGTTAAAGATGACAAGACACGTTTTGCTATTCTTAACCACTATTTGGATGGTTTCAAGGGAACTGTCT
TCCGTCAAACCCAATTTGCTGAGTTTGAGCATGCTATCCATGAAGCAGATGCATCTGGTCAAATCTTGACAGCCGACTTC
ATGAATAAACTTTACGCAGACCTCAATGAGAAATACTATAACCTTAAAGCTGAAGATAACTACGAAATTCAGTTTGAGTG
GGAACGTATTCCGCATTTCTACATGAATTACTATGTCTACCAATACGCTACAGGGTTTGCAGCAGCAAGCTACTTGGCTG
AAAAAATTGTTCACGGTACTGAGGAGGATAAAGAAGCTTACCTTACTTACCTTAAGGCGGGAAGCTCAGATTATCCTTTG
GAAGTTATCAAGAAAGCTGGTGTTGATATGACCAATACCGACTACTTGGATGCTGCCTTCAAAGTTTTTGAAGACCGTCT
CGTTGAATTGGAAGCCTTGGTTGAAAAAGGTGTTCACCTTTCTTAA

Domains

Predicted by InterproScan.

Oligopeptidase F (Peptidase_M3_N)

(112-181)

Peptidase family M3 (Peptidase_M3)

(202-581)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

98.669

100

0.987