Detailed information
Bioinformatically predicted
Overview
| Name | amiD | Type | Regulator |
| Locus tag | V6T26_RS02930 | Genome accession | NZ_CP145858 |
| Coordinates | 563029..563955 (+) | Length | 308 a.a. |
| NCBI ID | WP_002884564.1 | Uniprot ID | - |
| Organism | Streptococcus salivarius strain KSS11 | ||
| Function | internalize XIP (predicted from homology) Competence regulation |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| ICE | 499925..576656 | 563029..563955 | within | 0 |
Gene organization within MGE regions
Location: 499925..576656
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| V6T26_RS02630 (V6T26_02630) | ezrA | 500062..501786 (+) | 1725 | WP_410541381.1 | septation ring formation regulator EzrA | - |
| V6T26_RS02635 (V6T26_02635) | serB | 501898..502545 (+) | 648 | WP_037602880.1 | phosphoserine phosphatase SerB | - |
| V6T26_RS02640 (V6T26_02640) | - | 502769..503008 (+) | 240 | WP_037602882.1 | hypothetical protein | - |
| V6T26_RS02645 (V6T26_02645) | - | 503046..503936 (-) | 891 | WP_410541382.1 | DMT family transporter | - |
| V6T26_RS02650 (V6T26_02650) | - | 504066..504431 (-) | 366 | WP_037602887.1 | hypothetical protein | - |
| V6T26_RS02655 (V6T26_02655) | - | 504678..505043 (+) | 366 | WP_002884719.1 | OsmC family protein | - |
| V6T26_RS02660 (V6T26_02660) | - | 505137..505520 (+) | 384 | WP_021143776.1 | PaaI family thioesterase | - |
| V6T26_RS02665 (V6T26_02665) | - | 505534..506508 (+) | 975 | WP_038676569.1 | GyrI-like domain-containing protein | - |
| V6T26_RS02670 (V6T26_02670) | - | 506509..507240 (+) | 732 | WP_037602892.1 | pseudouridine synthase | - |
| V6T26_RS02675 (V6T26_02675) | - | 507321..507449 (+) | 129 | WP_002884629.1 | DUF4044 domain-containing protein | - |
| V6T26_RS02680 (V6T26_02680) | obgE | 507544..508857 (+) | 1314 | WP_410541383.1 | GTPase ObgE | - |
| V6T26_RS02685 (V6T26_02685) | - | 509481..509678 (+) | 198 | WP_410541384.1 | GTPase | - |
| V6T26_RS02690 (V6T26_02690) | - | 509755..510495 (-) | 741 | WP_060971807.1 | amino acid ABC transporter ATP-binding protein | - |
| V6T26_RS02695 (V6T26_02695) | - | 510495..512693 (-) | 2199 | WP_048673755.1 | ABC transporter substrate-binding protein/permease | - |
| V6T26_RS02700 (V6T26_02700) | - | 512893..513828 (+) | 936 | WP_410541385.1 | CPBP family intramembrane glutamic endopeptidase | - |
| V6T26_RS02705 (V6T26_02705) | - | 513899..514519 (+) | 621 | WP_410541386.1 | hypothetical protein | - |
| V6T26_RS02710 (V6T26_02710) | uvrB | 514509..516500 (+) | 1992 | WP_041826694.1 | excinuclease ABC subunit UvrB | - |
| V6T26_RS02715 (V6T26_02715) | - | 516545..517009 (+) | 465 | WP_049546232.1 | 8-oxo-dGTP diphosphatase | - |
| V6T26_RS02720 (V6T26_02720) | - | 517225..518037 (+) | 813 | WP_201061300.1 | transporter substrate-binding domain-containing protein | - |
| V6T26_RS02725 (V6T26_02725) | - | 518049..518846 (+) | 798 | WP_201061298.1 | transporter substrate-binding domain-containing protein | - |
| V6T26_RS02730 (V6T26_02730) | - | 519091..520200 (+) | 1110 | WP_410541387.1 | aminotransferase | - |
| V6T26_RS02735 (V6T26_02735) | - | 520262..521056 (+) | 795 | WP_410541388.1 | transporter substrate-binding domain-containing protein | - |
| V6T26_RS02740 (V6T26_02740) | rpsU | 521251..521427 (+) | 177 | WP_002884573.1 | 30S ribosomal protein S21 | - |
| V6T26_RS02745 (V6T26_02745) | mscL | 521587..521967 (-) | 381 | WP_002884705.1 | large conductance mechanosensitive channel protein MscL | - |
| V6T26_RS02750 (V6T26_02750) | dnaG | 522130..523941 (+) | 1812 | WP_410541389.1 | DNA primase | - |
| V6T26_RS02755 (V6T26_02755) | rpoD | 523945..525054 (+) | 1110 | WP_002884252.1 | RNA polymerase sigma factor RpoD | - |
| V6T26_RS02760 (V6T26_02760) | - | 525108..525443 (+) | 336 | WP_070438004.1 | metal-sulfur cluster assembly factor | - |
| V6T26_RS02765 (V6T26_02765) | - | 525454..526380 (+) | 927 | WP_118058098.1 | glycosyltransferase family 2 protein | - |
| V6T26_RS02770 (V6T26_02770) | rfbD | 526442..527293 (+) | 852 | WP_410541390.1 | dTDP-4-dehydrorhamnose reductase | - |
| V6T26_RS02775 (V6T26_02775) | - | 527293..528936 (+) | 1644 | WP_342988713.1 | hypothetical protein | - |
| V6T26_RS02780 (V6T26_02780) | - | 529091..530416 (+) | 1326 | WP_342988712.1 | lipopolysaccharide biosynthesis protein | - |
| V6T26_RS02785 (V6T26_02785) | - | 530416..531408 (+) | 993 | WP_342988710.1 | glycosyltransferase family 8 protein | - |
| V6T26_RS02790 (V6T26_02790) | - | 531438..531876 (+) | 439 | Protein_528 | glycosyltransferase family 2 protein | - |
| V6T26_RS02795 (V6T26_02795) | - | 531996..532691 (+) | 696 | WP_171968083.1 | glycosyltransferase family 2 protein | - |
| V6T26_RS02800 (V6T26_02800) | - | 532697..533032 (+) | 336 | WP_195520030.1 | DUF2304 domain-containing protein | - |
| V6T26_RS02805 (V6T26_02805) | - | 533029..533811 (+) | 783 | WP_195520029.1 | glycosyltransferase family A protein | - |
| V6T26_RS02810 (V6T26_02810) | - | 533754..535061 (+) | 1308 | WP_410541391.1 | beta-carotene 15,15'-monooxygenase | - |
| V6T26_RS02815 (V6T26_02815) | - | 535242..538193 (+) | 2952 | WP_410541392.1 | rhamnan synthesis F family protein | - |
| V6T26_RS02820 (V6T26_02820) | - | 538180..539487 (+) | 1308 | WP_410541393.1 | DUF2142 domain-containing protein | - |
| V6T26_RS02825 (V6T26_02825) | - | 539491..540738 (+) | 1248 | WP_410541394.1 | glycosyltransferase family 4 protein | - |
| V6T26_RS02830 (V6T26_02830) | - | 540838..542186 (+) | 1349 | WP_151404868.1 | IS3 family transposase | - |
| V6T26_RS02835 (V6T26_02835) | cps2T | 542344..543492 (+) | 1149 | WP_175061432.1 | beta 1-4 rhamnosyltransferase Cps2T | - |
| V6T26_RS02840 (V6T26_02840) | - | 543489..544427 (+) | 939 | WP_151404464.1 | glycosyltransferase family 2 protein | - |
| V6T26_RS02845 (V6T26_02845) | - | 544428..545234 (+) | 807 | WP_002886828.1 | ABC transporter permease | - |
| V6T26_RS02850 (V6T26_02850) | - | 545234..546436 (+) | 1203 | WP_410541395.1 | polysaccharide ABC transporter ATP-binding protein | - |
| V6T26_RS02855 (V6T26_02855) | - | 546437..548080 (+) | 1644 | WP_410541396.1 | rhamnan synthesis F family protein | - |
| V6T26_RS02860 (V6T26_02860) | radC | 548126..548812 (+) | 687 | WP_226972972.1 | RadC family protein | - |
| V6T26_RS02865 (V6T26_02865) | - | 548870..549565 (-) | 696 | WP_410541397.1 | gamma-glutamyl-gamma-aminobutyrate hydrolase family protein | - |
| V6T26_RS02870 (V6T26_02870) | - | 549558..550217 (-) | 660 | WP_002884205.1 | redox-sensing transcriptional repressor Rex | - |
| V6T26_RS02875 (V6T26_02875) | - | 550360..550707 (-) | 348 | WP_002884733.1 | DUF1831 domain-containing protein | - |
| V6T26_RS02880 (V6T26_02880) | - | 550709..551821 (-) | 1113 | WP_410541398.1 | cysteine desulfurase family protein | - |
| V6T26_RS02885 (V6T26_02885) | - | 551825..552796 (-) | 972 | WP_002884482.1 | ribose-phosphate diphosphokinase | - |
| V6T26_RS02890 (V6T26_02890) | - | 553072..553647 (-) | 576 | WP_022496737.1 | CYTH domain-containing protein | - |
| V6T26_RS02895 (V6T26_02895) | - | 553743..554417 (+) | 675 | WP_014634828.1 | GTP pyrophosphokinase family protein | - |
| V6T26_RS02900 (V6T26_02900) | - | 554389..555225 (+) | 837 | WP_002884507.1 | NAD kinase | - |
| V6T26_RS02905 (V6T26_02905) | - | 555222..556118 (+) | 897 | WP_410541399.1 | RluA family pseudouridine synthase | - |
| V6T26_RS02910 (V6T26_02910) | pta | 556134..557117 (+) | 984 | WP_155198472.1 | phosphate acetyltransferase | - |
| V6T26_RS02915 (V6T26_02915) | amiA | 557353..559323 (+) | 1971 | WP_002884208.1 | peptide ABC transporter substrate-binding protein | Regulator |
| V6T26_RS02920 (V6T26_02920) | amiA | 559505..561475 (+) | 1971 | WP_148512819.1 | peptide ABC transporter substrate-binding protein | Regulator |
| V6T26_RS02925 (V6T26_02925) | amiC | 561536..563029 (+) | 1494 | WP_048673698.1 | ABC transporter permease | Regulator |
| V6T26_RS02930 (V6T26_02930) | amiD | 563029..563955 (+) | 927 | WP_002884564.1 | oligopeptide ABC transporter permease OppC | Regulator |
| V6T26_RS02935 (V6T26_02935) | amiE | 563965..565050 (+) | 1086 | WP_021143811.1 | ABC transporter ATP-binding protein | Regulator |
| V6T26_RS02940 (V6T26_02940) | amiF | 565043..565972 (+) | 930 | WP_021143812.1 | ATP-binding cassette domain-containing protein | Regulator |
| V6T26_RS02945 (V6T26_02945) | - | 566024..566809 (-) | 786 | WP_021143813.1 | hypothetical protein | - |
| V6T26_RS02950 (V6T26_02950) | - | 566821..567519 (-) | 699 | WP_410541400.1 | ABC transporter ATP-binding protein | - |
| V6T26_RS02955 (V6T26_02955) | - | 567524..567901 (-) | 378 | WP_021143815.1 | GntR family transcriptional regulator | - |
| V6T26_RS02960 (V6T26_02960) | - | 568083..568877 (+) | 795 | WP_021143816.1 | HAD-IIB family hydrolase | - |
| V6T26_RS02965 (V6T26_02965) | - | 568870..569688 (+) | 819 | WP_014634817.1 | Cof-type HAD-IIB family hydrolase | - |
| V6T26_RS02970 (V6T26_02970) | ftsY | 569699..571096 (+) | 1398 | WP_021143818.1 | signal recognition particle-docking protein FtsY | - |
| V6T26_RS02975 (V6T26_02975) | gmk | 571332..571961 (+) | 630 | WP_002884259.1 | guanylate kinase | - |
| V6T26_RS02980 (V6T26_02980) | rpoZ | 571983..572297 (+) | 315 | WP_002886855.1 | DNA-directed RNA polymerase subunit omega | - |
| V6T26_RS02985 (V6T26_02985) | - | 572440..574836 (+) | 2397 | WP_410541401.1 | primosomal protein N' | - |
| V6T26_RS02990 (V6T26_02990) | fmt | 574854..575789 (+) | 936 | WP_410541402.1 | methionyl-tRNA formyltransferase | - |
Sequence
Protein
Download Length: 308 a.a. Molecular weight: 34609.70 Da Isoelectric Point: 9.7054
>NTDB_id=940240 V6T26_RS02930 WP_002884564.1 563029..563955(+) (amiD) [Streptococcus salivarius strain KSS11]
MASIDKSKFQFVKRDDFASETIDAPAYSYWKSVMRQFFKKKSTTVMLGILIAIILMSFIYPMFSKFDFNDVSKVNDFSVR
YVHPNAQYWFGTDSNGKSLFDSVWFGARNSILIAVIATFLNVAIGLVVGAVWGISKTFDMIMMEIYNIISNIPALLVVIV
LTYSLGAGFWNMIFAMTVTGWIGIAYTIRIQIMRYRDLEYNLASRTLGTPTPKIVVKNIMPQLVSVIVTMASQLLPGFIS
YEAFLSYFGLGLPVTTPSLGRLISDYAQNVTVNAYLFWIPLTTLILVSLSLFIVGQNLADASDPRTHR
MASIDKSKFQFVKRDDFASETIDAPAYSYWKSVMRQFFKKKSTTVMLGILIAIILMSFIYPMFSKFDFNDVSKVNDFSVR
YVHPNAQYWFGTDSNGKSLFDSVWFGARNSILIAVIATFLNVAIGLVVGAVWGISKTFDMIMMEIYNIISNIPALLVVIV
LTYSLGAGFWNMIFAMTVTGWIGIAYTIRIQIMRYRDLEYNLASRTLGTPTPKIVVKNIMPQLVSVIVTMASQLLPGFIS
YEAFLSYFGLGLPVTTPSLGRLISDYAQNVTVNAYLFWIPLTTLILVSLSLFIVGQNLADASDPRTHR
Nucleotide
Download Length: 927 bp
>NTDB_id=940240 V6T26_RS02930 WP_002884564.1 563029..563955(+) (amiD) [Streptococcus salivarius strain KSS11]
ATGGCTTCAATTGATAAAAGTAAGTTCCAATTTGTAAAGCGCGATGATTTTGCCTCTGAAACAATTGATGCGCCGGCCTA
TTCATACTGGAAATCGGTGATGCGTCAGTTCTTCAAGAAAAAGTCAACAACTGTTATGTTGGGTATCTTGATTGCTATCA
TTTTGATGAGCTTTATCTACCCAATGTTTTCAAAATTTGACTTCAATGACGTGTCTAAGGTTAATGACTTTAGTGTGCGT
TATGTGCATCCAAATGCTCAATACTGGTTCGGTACAGACAGTAATGGTAAGTCTCTCTTTGACAGTGTTTGGTTTGGAGC
TCGTAATTCTATCCTTATTGCTGTTATCGCTACCTTCCTTAACGTTGCTATTGGTTTAGTCGTTGGTGCTGTTTGGGGGA
TTTCTAAGACCTTCGATATGATTATGATGGAAATCTACAACATCATCTCAAATATTCCTGCCCTCCTTGTAGTTATCGTC
TTGACTTACTCATTGGGTGCTGGTTTCTGGAATATGATCTTTGCCATGACTGTTACAGGGTGGATTGGTATTGCCTATAC
TATCCGTATTCAAATCATGCGTTACCGTGATTTGGAGTATAACTTGGCTTCTCGTACACTGGGAACACCAACTCCTAAGA
TTGTGGTTAAAAACATCATGCCACAACTAGTGTCAGTTATCGTAACTATGGCTAGTCAGCTCTTGCCAGGATTTATCTCT
TACGAAGCCTTCCTTTCTTACTTTGGTTTGGGGCTTCCCGTTACGACGCCTAGTCTTGGTCGTTTGATTTCAGACTATGC
ACAGAACGTTACAGTCAATGCTTATCTCTTCTGGATTCCATTGACTACCTTGATCCTCGTTTCCCTCTCTCTCTTTATTG
TCGGTCAAAACTTGGCGGATGCCAGTGACCCACGTACGCATAGATAG
ATGGCTTCAATTGATAAAAGTAAGTTCCAATTTGTAAAGCGCGATGATTTTGCCTCTGAAACAATTGATGCGCCGGCCTA
TTCATACTGGAAATCGGTGATGCGTCAGTTCTTCAAGAAAAAGTCAACAACTGTTATGTTGGGTATCTTGATTGCTATCA
TTTTGATGAGCTTTATCTACCCAATGTTTTCAAAATTTGACTTCAATGACGTGTCTAAGGTTAATGACTTTAGTGTGCGT
TATGTGCATCCAAATGCTCAATACTGGTTCGGTACAGACAGTAATGGTAAGTCTCTCTTTGACAGTGTTTGGTTTGGAGC
TCGTAATTCTATCCTTATTGCTGTTATCGCTACCTTCCTTAACGTTGCTATTGGTTTAGTCGTTGGTGCTGTTTGGGGGA
TTTCTAAGACCTTCGATATGATTATGATGGAAATCTACAACATCATCTCAAATATTCCTGCCCTCCTTGTAGTTATCGTC
TTGACTTACTCATTGGGTGCTGGTTTCTGGAATATGATCTTTGCCATGACTGTTACAGGGTGGATTGGTATTGCCTATAC
TATCCGTATTCAAATCATGCGTTACCGTGATTTGGAGTATAACTTGGCTTCTCGTACACTGGGAACACCAACTCCTAAGA
TTGTGGTTAAAAACATCATGCCACAACTAGTGTCAGTTATCGTAACTATGGCTAGTCAGCTCTTGCCAGGATTTATCTCT
TACGAAGCCTTCCTTTCTTACTTTGGTTTGGGGCTTCCCGTTACGACGCCTAGTCTTGGTCGTTTGATTTCAGACTATGC
ACAGAACGTTACAGTCAATGCTTATCTCTTCTGGATTCCATTGACTACCTTGATCCTCGTTTCCCTCTCTCTCTTTATTG
TCGGTCAAAACTTGGCGGATGCCAGTGACCCACGTACGCATAGATAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| amiD | Streptococcus salivarius strain HSISS4 |
98.701 |
100 |
0.987 |
| amiD | Streptococcus thermophilus LMG 18311 |
96.104 |
100 |
0.961 |
| amiD | Streptococcus thermophilus LMD-9 |
96.104 |
100 |
0.961 |