Detailed information NTG0940205

Bioinformatically predicted

Overview

• Name: ssbA
• Type: Machinery gene
• Locus tag: V6T01_RS09420
• Genome accession: NZ_CP145856
• Coordinates: 2020214..2020606 (-)
• Length: 130 a.a.
• NCBI ID: WP_037601494.1
• Uniprot ID: A0A074JHY3
• Organism: Streptococcus salivarius strain KSS1
• Function: ssDNA binding (predicted from homology) DNA processing

Genomic Context

Location: 2015214..2025606

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
V6T01_RS09380 (V6T01_09355)	dapD	2015283..2015981 (-)	699	WP_002886999.1	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase	-
V6T01_RS09385 (V6T01_09360)	-	2016067..2016819 (-)	753	WP_410541528.1	HAD family hydrolase	-
V6T01_RS09390 (V6T01_09365)	-	2016933..2017772 (-)	840	WP_410541301.1	methyltransferase domain-containing protein	-
V6T01_RS09400 (V6T01_09375)	-	2018193..2018351 (+)	159	WP_410541300.1	class IIb bacteriocin, lactobin A/cerein 7B family	-
V6T01_RS09405 (V6T01_09380)	-	2018372..2018539 (+)	168	WP_037600096.1	class IIb bacteriocin, lactobin A/cerein 7B family	-
V6T01_RS09410 (V6T01_09385)	-	2018587..2018841 (+)	255	WP_002892006.1	hypothetical protein	-
V6T01_RS09415 (V6T01_09390)	tadA	2018927..2019445 (-)	519	WP_060971580.1	tRNA adenosine(34) deaminase TadA	-
V6T01_RS09420 (V6T01_09395)	ssbA	2020214..2020606 (-)	393	WP_037601494.1	single-stranded DNA-binding protein	Machinery gene
V6T01_RS09425 (V6T01_09400)	-	2020835..2021062 (-)	228	WP_003095911.1	sulfurtransferase TusA family protein	-
V6T01_RS09430 (V6T01_09405)	-	2021077..2022108 (-)	1032	WP_037601491.1	YeeE/YedE family protein	-
V6T01_RS09435 (V6T01_09410)	ytpR	2022246..2022869 (-)	624	WP_002885779.1	YtpR family tRNA-binding protein	-
V6T01_RS09440 (V6T01_09415)	-	2022902..2023426 (-)	525	WP_410541299.1	hypothetical protein	-
V6T01_RS09445 (V6T01_09420)	-	2023430..2023744 (-)	315	WP_410541298.1	thioredoxin family protein	-
V6T01_RS09450 (V6T01_09425)	-	2023741..2024025 (-)	285	WP_013991255.1	DUF4651 domain-containing protein	-
V6T01_RS09455 (V6T01_09430)	pepA	2024125..2025192 (+)	1068	WP_013991256.1	glutamyl aminopeptidase	-

Sequence

Protein

• Length: 130 a.a.
• Molecular weight: 14787.72 Da
• Isoelectric Point: 5.9275

>NTDB_id=940205 V6T01_RS09420 WP_037601494.1 2020214..2020606(-) (ssbA) [Streptococcus salivarius strain KSS1]
MYNKVILIGRLTATPEMVKTASDRSFTRVTVAVNRRYKTQNGEREADFITVVVWGRLAETLVSYASKGSLISLDGELRTR
KYDKDGQTHYVTEVLCSSFQLLESRAQRAVRENNPDNDLADLVLEEELPF

Nucleotide

• Length: 393 bp

>NTDB_id=940205 V6T01_RS09420 WP_037601494.1 2020214..2020606(-) (ssbA) [Streptococcus salivarius strain KSS1]
ATGTATAACAAAGTTATTTTAATTGGACGTTTGACAGCGACTCCTGAAATGGTAAAAACTGCTAGTGATAGGTCTTTTAC
ACGTGTTACAGTTGCGGTTAATCGTCGCTATAAGACGCAAAATGGTGAGCGTGAGGCTGACTTTATTACAGTGGTTGTCT
GGGGGCGTTTGGCTGAGACCTTAGTATCTTATGCTAGCAAGGGGAGTTTAATTTCTCTTGATGGGGAGCTTCGTACCCGT
AAGTACGATAAGGATGGTCAAACCCATTACGTTACTGAAGTGCTTTGTTCCTCTTTCCAACTTCTGGAGAGTCGTGCTCA
GCGTGCTGTTAGGGAAAATAATCCTGATAATGACTTGGCTGACCTCGTCTTGGAAGAAGAACTTCCCTTCTAG

Domains

Predicted by InterproScan.

• Single-strand binding protein family (SSB) (3-102)

3D structure

• AlphaFold DB: A0A074JHY3

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ssbA	Streptococcus mutans UA159	80.153	100	0.808
ssbB	Streptococcus sobrinus strain NIDR 6715-7	77.099	100	0.777
ssbB/cilA	Streptococcus pneumoniae TIGR4	75.573	100	0.762
ssbB/cilA	Streptococcus mitis SK321	74.809	100	0.754
ssbB/cilA	Streptococcus pneumoniae R6	74.809	100	0.754
ssbB/cilA	Streptococcus pneumoniae Rx1	74.809	100	0.754
ssbB/cilA	Streptococcus pneumoniae D39	74.809	100	0.754
ssbB/cilA	Streptococcus mitis NCTC 12261	73.282	100	0.738
ssbB	Lactococcus lactis subsp. cremoris KW2	62.5	86.154	0.538
ssbA	Bacillus subtilis subsp. subtilis str. 168	47.17	81.538	0.385
ssb	Latilactobacillus sakei subsp. sakei 23K	46.226	81.538	0.377