Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrA   Type   Machinery gene
Locus tag   ABUS15_RS10275 Genome accession   NZ_CP169773
Coordinates   2159008..2161269 (-) Length   753 a.a.
NCBI ID   WP_000166999.1    Uniprot ID   A0ABX6CG46
Organism   Acinetobacter baumannii strain Hv431     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2154008..2166269
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABUS15_RS10265 adeA 2154578..2155768 (+) 1191 WP_031960527.1 multidrug efflux RND transporter periplasmic adaptor subunit AdeA -
  ABUS15_RS10270 adeB 2155765..2158875 (+) 3111 WP_000987604.1 multidrug efflux RND transporter permease subunit AdeB -
  ABUS15_RS10275 uvrA 2159008..2161269 (-) 2262 WP_000166999.1 excinuclease ABC subunit UvrA Machinery gene
  ABUS15_RS10280 - 2161936..2163153 (-) 1218 WP_031960526.1 phage/plasmid replication protein, II/X family -
  ABUS15_RS10285 - 2163686..2164067 (+) 382 Protein_1993 DUF4882 family protein -
  ABUS15_RS10290 - 2164125..2165234 (-) 1110 WP_000842124.1 S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase -

Sequence

Protein


Download         Length: 753 a.a.        Molecular weight: 84627.98 Da        Isoelectric Point: 7.7931

>NTDB_id=940187 ABUS15_RS10275 WP_000166999.1 2159008..2161269(-) (uvrA) [Acinetobacter baumannii strain Hv431]
MTKRTINIYGARQNNLKNISLKIPKHKIVVFTGVSGSGKSSLVFETIGAEAQRQINETQDSFVRNRLQHFGVTDVDKIEN
LNVPVIINQKPLTGNIRSTVATITDIYANLRLLFSRMGEPFVGYSNVFSFNHPNGMCPQCEGIGIEQTIDIYKILDLDKS
LNEEGAIDFPTYQPTAWRWTRYADSGYFDLDKKLKDYSEKEWDLFLYAPQHKPLNPTSKWRKTALYEGLIPRFERNFLKG
EAQERNRYRNKLERIITIKECSLCKGQRLNQKSLSCKINGKNIAECTALSVSSLLEFLESIKSEKFETVLHEIKNKLNNL
NLVGLSYLNLNRVSNTLSGGESQRIKMVKHLGNSLVDLLYIFDEPSIGLHPKDLDNIIKIIQKIRDKGNSVLLVEHDPDL
IRTADHVVDMGPLSGINGGEIIYQGTFEELKNSSGLTGAFFRRPNTYKKEPRMGNEWISIKNAHLFNLKNIDVDIPKNCL
TVITGVAGSGKSTLISKVLPQQYPETKVVDQSAITASIRSNLLTYLDLLDPIRQLFAKTNKVSAKLFSFNSEGACPQCKG
SGIERVELAFLDDIEMTCDVCHGSGYAPEVLKYLYKDKNIAEILKMTVAEASNFFEDRILQQQFNSLMSLGLDYIAIGQR
LNTFSGGERQRLKLTKQINETDNIFVLDEPSTGLHPSDTEKLISLLNNLVEKGNTIIVIEHNLDIISQADWIVDIGPLAG
DKGGELVFSGTVSGLLSAEKSLTGYYLKKYLEL

Nucleotide


Download         Length: 2262 bp        

>NTDB_id=940187 ABUS15_RS10275 WP_000166999.1 2159008..2161269(-) (uvrA) [Acinetobacter baumannii strain Hv431]
ATGACTAAAAGAACAATAAATATTTATGGTGCCAGACAAAATAACCTTAAAAATATTTCATTGAAGATTCCTAAACATAA
AATCGTTGTCTTTACTGGAGTCTCTGGTTCAGGTAAATCTTCTTTAGTTTTCGAGACTATTGGCGCAGAAGCTCAAAGAC
AAATTAATGAAACTCAAGATAGTTTTGTACGTAATCGCTTGCAACATTTTGGTGTTACTGACGTTGATAAAATTGAAAAT
TTAAATGTACCTGTGATTATTAATCAAAAACCTTTAACGGGCAATATTCGCTCAACTGTTGCAACAATTACAGATATTTA
TGCCAATCTTCGCTTGTTATTTTCACGTATGGGTGAGCCGTTTGTTGGATACTCCAATGTCTTTTCTTTTAATCACCCAA
ATGGCATGTGTCCACAATGCGAAGGTATTGGAATCGAGCAAACAATTGATATTTATAAAATATTAGATTTAGATAAATCC
TTAAATGAAGAAGGTGCTATAGACTTCCCTACTTATCAACCTACAGCATGGCGTTGGACGCGATATGCAGATTCAGGTTA
CTTTGATTTAGATAAAAAATTAAAAGATTATAGTGAAAAAGAATGGGACTTATTTTTGTATGCTCCTCAGCACAAGCCTT
TAAACCCGACAAGTAAATGGAGAAAAACCGCACTTTATGAAGGACTAATTCCCAGATTTGAGCGTAATTTTTTAAAAGGT
GAAGCACAGGAAAGAAATCGTTATAGAAATAAACTTGAGCGAATTATTACAATCAAAGAATGCTCCTTATGTAAGGGACA
ACGGCTAAATCAAAAATCCTTATCTTGTAAAATTAATGGTAAAAATATTGCGGAATGTACGGCCCTATCCGTATCAAGTC
TTTTAGAGTTTCTCGAATCGATAAAAAGTGAAAAATTTGAAACCGTTTTGCACGAAATAAAAAATAAACTCAATAACTTA
AATCTCGTTGGACTCAGCTATTTAAACCTTAACCGTGTCAGCAATACATTGTCGGGAGGAGAATCACAACGAATTAAAAT
GGTTAAACATTTGGGTAATAGTCTGGTTGACCTACTCTATATTTTTGATGAACCAAGTATTGGCCTGCACCCCAAAGATT
TAGATAATATTATTAAAATTATTCAAAAAATTAGAGATAAGGGAAATAGTGTTTTATTGGTTGAACATGATCCTGATCTT
ATTAGAACAGCTGATCATGTCGTTGATATGGGGCCTCTTTCTGGTATTAACGGCGGTGAAATTATTTACCAAGGAACTTT
TGAAGAATTAAAAAATTCATCAGGTTTAACGGGAGCGTTTTTTAGAAGGCCAAATACCTATAAGAAAGAACCACGTATGG
GCAATGAATGGATTTCAATTAAAAATGCTCATTTATTCAATTTAAAAAATATTGATGTCGACATTCCTAAGAACTGTCTA
ACCGTTATTACAGGAGTCGCTGGTTCAGGAAAAAGCACATTAATAAGTAAAGTATTACCACAACAATATCCTGAAACAAA
AGTTGTTGATCAATCTGCAATTACTGCAAGTATTCGCTCAAATTTATTGACCTATCTTGACCTTCTTGATCCGATTCGTC
AGCTATTTGCAAAAACAAATAAAGTAAGTGCCAAGCTCTTTAGTTTTAATAGTGAAGGTGCTTGCCCTCAATGTAAAGGA
TCTGGTATCGAAAGGGTTGAACTTGCATTTTTAGATGATATTGAAATGACATGTGATGTTTGTCATGGTTCTGGATATGC
ACCTGAAGTTTTAAAATATCTTTATAAAGATAAAAATATTGCTGAAATTTTAAAAATGACGGTTGCAGAAGCAAGCAACT
TTTTTGAAGATCGAATTTTACAGCAACAATTTAATTCTTTGATGAGTTTGGGGCTAGACTACATTGCAATCGGCCAACGC
TTAAATACATTTTCGGGTGGTGAGCGTCAAAGGTTAAAACTCACAAAACAAATTAATGAAACAGATAATATTTTTGTATT
GGATGAACCGAGTACAGGTCTACACCCTTCTGATACTGAAAAACTAATTAGTTTATTAAATAACTTAGTTGAGAAAGGCA
ACACAATCATTGTGATTGAACACAACTTAGACATCATAAGTCAAGCCGACTGGATTGTTGATATTGGTCCTTTGGCGGGT
GACAAAGGTGGTGAATTGGTATTCTCAGGAACTGTTAGCGGTTTGCTTTCAGCAGAAAAATCTTTAACAGGTTATTATTT
GAAAAAATATTTAGAGCTGTAA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(468-671)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrA Streptococcus pneumoniae R6

34.917

100

0.361
  uvrA Streptococcus pneumoniae TIGR4

34.917

100

0.361
  uvrA Streptococcus pneumoniae D39

34.917

100

0.361