Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   V6Z34_RS13030 Genome accession   NZ_CP145817
Coordinates   2663729..2664496 (-) Length   255 a.a.
NCBI ID   WP_003152982.1    Uniprot ID   -
Organism   Bacillus velezensis strain WH-7     
Function   ssDNA annealing; plasmid transformation (predicted from homology)   
DNA processing Homologous recombination

Genomic Context

Location: 2658729..2669496
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V6Z34_RS13010 - 2658931..2659743 (-) 813 WP_003152991.1 pyruvate, water dikinase regulatory protein -
  V6Z34_RS13015 ccpN 2659769..2660407 (-) 639 WP_003152989.1 transcriptional regulator CcpN -
  V6Z34_RS13020 glyS 2660508..2662547 (-) 2040 WP_014305438.1 glycine--tRNA ligase subunit beta -
  V6Z34_RS13025 glyQ 2662540..2663427 (-) 888 WP_003152984.1 glycine--tRNA ligase subunit alpha -
  V6Z34_RS13030 recO 2663729..2664496 (-) 768 WP_003152982.1 DNA repair protein RecO Machinery gene
  V6Z34_RS13035 - 2664533..2664676 (-) 144 WP_007408286.1 YqzL family protein -
  V6Z34_RS13040 era 2664832..2665737 (-) 906 WP_003152978.1 GTPase Era -
  V6Z34_RS13045 - 2665718..2666128 (-) 411 WP_003152976.1 cytidine deaminase -
  V6Z34_RS13050 - 2666252..2666626 (-) 375 WP_003152974.1 diacylglycerol kinase family protein -
  V6Z34_RS13055 ybeY 2666607..2667080 (-) 474 WP_003152973.1 rRNA maturation RNase YbeY -
  V6Z34_RS13060 - 2667081..2669213 (-) 2133 WP_003152972.1 HD family phosphohydrolase -

Sequence

Protein


Download         Length: 255 a.a.        Molecular weight: 29264.86 Da        Isoelectric Point: 8.3099

>NTDB_id=940109 V6Z34_RS13030 WP_003152982.1 2663729..2664496(-) (recO) [Bacillus velezensis strain WH-7]
MLTKCEGIVLRTNDYGETNKIVTLLTREHGKIGVMARGARKSASRLSAVSQPFLYGSFLMQRTSGLGTLQQGEMILSMRT
IREDLFLTAYAAFIAELTDKGTEEKKPNPYLFELILESFKRLNDGTDPDVITFIVQMKMLGVMGLYPELNHCVHCKSGEG
TFHFSIRDNGFICHRCFEKDPYRVPISPQTARLLRLFYYFDIGRLGSVSLKQETKNEIKQVIDLYYEEYSGLYLKSKRFL
DQMESMKNLLDENKS

Nucleotide


Download         Length: 768 bp        

>NTDB_id=940109 V6Z34_RS13030 WP_003152982.1 2663729..2664496(-) (recO) [Bacillus velezensis strain WH-7]
ATGCTGACTAAATGTGAAGGAATCGTGCTCCGTACGAATGACTACGGGGAGACGAATAAAATCGTGACATTGCTGACGAG
GGAACACGGCAAAATCGGCGTCATGGCAAGGGGCGCCAGGAAGTCAGCCAGCCGGCTGTCAGCAGTCAGCCAGCCGTTTT
TGTACGGGTCATTTTTAATGCAAAGAACATCCGGACTCGGCACGCTCCAGCAGGGTGAAATGATTCTCAGCATGAGAACG
ATCAGAGAAGATTTATTTTTGACGGCGTATGCCGCTTTTATCGCTGAACTCACTGACAAAGGAACGGAAGAGAAGAAACC
GAACCCCTATTTATTCGAATTGATTCTCGAATCCTTTAAGAGGCTGAATGACGGGACTGACCCGGACGTGATCACCTTCA
TCGTGCAGATGAAAATGCTCGGCGTCATGGGGCTGTATCCGGAGCTGAATCATTGTGTCCACTGCAAAAGCGGGGAAGGG
ACGTTTCATTTTTCGATAAGAGATAACGGTTTTATCTGCCACCGCTGCTTTGAAAAGGATCCGTACAGAGTTCCGATTTC
GCCGCAAACGGCAAGGCTGCTAAGGCTTTTTTATTACTTTGATATCGGAAGGCTCGGCAGCGTCTCGTTAAAACAGGAAA
CCAAAAACGAAATTAAACAGGTCATTGATCTGTATTACGAGGAATATTCAGGACTTTATTTAAAGTCAAAACGGTTTTTA
GACCAGATGGAAAGCATGAAGAACCTTTTGGACGAAAACAAAAGTTGA

Domains

Predicted by InterproScan.

Recombination protein O C terminal (RecO_C)

(82-237)

Recombination protein O N terminal (RecO_N)

(1-75)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Bacillus subtilis subsp. subtilis str. 168

89.412

100

0.894