Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapC   Type   Regulator
Locus tag   V6Z34_RS07445 Genome accession   NZ_CP145817
Coordinates   1485996..1487132 (-) Length   378 a.a.
NCBI ID   WP_342490356.1    Uniprot ID   -
Organism   Bacillus velezensis strain WH-7     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 1476275..1523584 1485996..1487132 within 0


Gene organization within MGE regions


Location: 1476275..1523584
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V6Z34_RS07375 - 1477076..1477318 (-) 243 WP_060675137.1 hypothetical protein -
  V6Z34_RS07380 - 1477428..1478090 (+) 663 WP_340977416.1 hypothetical protein -
  V6Z34_RS07385 - 1479572..1479805 (-) 234 WP_106503075.1 hypothetical protein -
  V6Z34_RS07390 - 1480000..1480395 (-) 396 WP_376910402.1 hypothetical protein -
  V6Z34_RS07395 - 1480385..1480750 (-) 366 WP_232489585.1 hypothetical protein -
  V6Z34_RS07400 - 1480899..1481300 (-) 402 WP_057079913.1 hypothetical protein -
  V6Z34_RS07405 - 1481437..1481673 (+) 237 WP_232489733.1 helix-turn-helix transcriptional regulator -
  V6Z34_RS07410 - 1481799..1482080 (+) 282 WP_057079915.1 hypothetical protein -
  V6Z34_RS07415 - 1482133..1482378 (-) 246 WP_041481754.1 helix-turn-helix domain-containing protein -
  V6Z34_RS07420 - 1482881..1483597 (+) 717 WP_322221253.1 hypothetical protein -
  V6Z34_RS07425 - 1483630..1483938 (-) 309 WP_376910408.1 hypothetical protein -
  V6Z34_RS07430 - 1483951..1485375 (-) 1425 WP_376910410.1 lipase -
  V6Z34_RS07435 - 1485425..1485790 (+) 366 WP_342490354.1 DUF1433 domain-containing protein -
  V6Z34_RS07440 - 1485833..1486006 (-) 174 WP_169061491.1 hypothetical protein -
  V6Z34_RS07445 rapC 1485996..1487132 (-) 1137 WP_342490356.1 aspartate phosphatase Regulator
  V6Z34_RS07450 - 1487314..1488144 (-) 831 WP_014417674.1 SHOCT domain-containing protein -
  V6Z34_RS07455 - 1488310..1489113 (-) 804 WP_376910413.1 SH3 domain-containing protein -
  V6Z34_RS07460 - 1489202..1491820 (-) 2619 WP_376910415.1 hypothetical protein -
  V6Z34_RS07465 - 1491893..1494391 (-) 2499 Protein_1412 peptidoglycan DD-metalloendopeptidase family protein -
  V6Z34_RS07470 - 1494474..1496297 (-) 1824 WP_022553067.1 reverse transcriptase/maturase family protein -
  V6Z34_RS07475 - 1496847..1501208 (-) 4362 Protein_1414 phage tail tape measure protein -
  V6Z34_RS07480 - 1501953..1503089 (-) 1137 WP_376910420.1 GIY-YIG nuclease family protein -
  V6Z34_RS07485 - 1503264..1504142 (+) 879 WP_106503055.1 tyrosine-type recombinase/integrase -
  V6Z34_RS07490 - 1504255..1505760 (+) 1506 WP_376910423.1 hypothetical protein -
  V6Z34_RS07495 - 1506295..1506960 (+) 666 WP_057079926.1 hypothetical protein -
  V6Z34_RS07500 - 1506972..1507460 (-) 489 WP_376910426.1 hypothetical protein -
  V6Z34_RS07505 - 1507457..1507627 (-) 171 WP_160182955.1 XkdX family protein -
  V6Z34_RS07510 - 1507628..1508011 (-) 384 WP_266054844.1 hypothetical protein -
  V6Z34_RS07515 - 1508008..1509330 (-) 1323 WP_266054846.1 hypothetical protein -
  V6Z34_RS07520 - 1509369..1509938 (-) 570 WP_266054847.1 HNH endonuclease -
  V6Z34_RS07525 - 1509949..1510143 (-) 195 WP_014471790.1 hypothetical protein -
  V6Z34_RS07530 - 1510760..1513606 (-) 2847 WP_376910430.1 hypothetical protein -
  V6Z34_RS07535 - 1513950..1514846 (-) 897 WP_266054851.1 hypothetical protein -
  V6Z34_RS07540 - 1515389..1516351 (+) 963 WP_208557828.1 AimR family lysis-lysogeny pheromone receptor -
  V6Z34_RS07545 - 1516395..1516517 (+) 123 WP_134998052.1 lysogeny pheromone AimP family peptide -
  V6Z34_RS07550 - 1516625..1517059 (+) 435 WP_376910434.1 hypothetical protein -
  V6Z34_RS07555 - 1517222..1517380 (+) 159 WP_376910436.1 hypothetical protein -
  V6Z34_RS07560 - 1517491..1517916 (+) 426 WP_376910438.1 hypothetical protein -
  V6Z34_RS07565 - 1517933..1518190 (+) 258 WP_376910441.1 hypothetical protein -
  V6Z34_RS07570 - 1518239..1518418 (+) 180 WP_057079937.1 hypothetical protein -
  V6Z34_RS07575 - 1518507..1519046 (+) 540 WP_376910442.1 hypothetical protein -
  V6Z34_RS07580 - 1519043..1519465 (+) 423 WP_376910444.1 hypothetical protein -
  V6Z34_RS07585 - 1519529..1519846 (+) 318 WP_376910446.1 hypothetical protein -
  V6Z34_RS07590 - 1519906..1520493 (+) 588 WP_376910448.1 hypothetical protein -
  V6Z34_RS07595 - 1520845..1521510 (+) 666 WP_376910451.1 hypothetical protein -
  V6Z34_RS07600 - 1521875..1523584 (+) 1710 WP_376910452.1 recombinase family protein -

Sequence

Protein


Download         Length: 378 a.a.        Molecular weight: 44671.95 Da        Isoelectric Point: 4.8741

>NTDB_id=940092 V6Z34_RS07445 WP_342490356.1 1485996..1487132(-) (rapC) [Bacillus velezensis strain WH-7]
MKQLISSSKVGVKINEWYKYIRMFSVPDAEVLKSEVEQEINAMEENQDLLLYYSLMCFRHQLMLDYLEPKTMNEERPEIS
DLLEKIESSQAKLKGILEYYFNFFRGMYEFEEYEYLKAISFYKQAEKKLSLVADEIERAEFHYKVAEIYYHMKQTHMSMH
HIVQAIESYRAHETYSVREIQCSFVIGLNYLDMEYPEKATPHFQKAYKKALEIDMPRLAGSALYNLGISSFSEEKFDEAI
EYFKEGVLVYEQNGYEHANRLLDILFMLAKTNFKVNKKTEGTAVYNHGLSLAKNLNDEVLTKMFDFLNALYIDDNKETLN
EILTYLEFKTMFSDVEDLATDAAKYYTKNEDHKAAGLFYEKVLYAQKQIQRGDCLYEI

Nucleotide


Download         Length: 1137 bp        

>NTDB_id=940092 V6Z34_RS07445 WP_342490356.1 1485996..1487132(-) (rapC) [Bacillus velezensis strain WH-7]
TTGAAACAGTTAATCTCCTCATCCAAAGTCGGCGTGAAGATTAATGAGTGGTACAAGTATATTCGCATGTTTAGTGTTCC
TGATGCAGAGGTGCTGAAATCAGAAGTGGAACAAGAAATAAACGCTATGGAAGAAAATCAGGATTTATTGTTGTACTATT
CCCTCATGTGTTTTAGACATCAATTAATGCTTGATTATCTTGAACCAAAAACCATGAATGAAGAACGACCTGAGATTTCA
GACTTATTAGAAAAGATCGAAAGTAGCCAGGCTAAATTGAAAGGAATTCTTGAATATTACTTTAACTTTTTCCGTGGGAT
GTATGAATTTGAAGAATACGAATATCTTAAAGCGATAAGTTTTTACAAACAAGCGGAAAAGAAGTTGTCACTTGTAGCCG
ACGAAATTGAGCGAGCGGAGTTTCATTACAAAGTCGCTGAAATTTATTATCACATGAAACAAACACACATGTCGATGCAC
CATATTGTTCAAGCAATCGAAAGCTACAGAGCGCATGAAACCTATTCTGTTAGAGAAATTCAATGTTCATTCGTCATTGG
TCTGAATTATTTAGACATGGAGTATCCAGAAAAGGCTACCCCTCATTTTCAAAAAGCTTATAAAAAAGCACTTGAAATTG
ATATGCCAAGATTAGCTGGATCCGCTCTATATAATTTAGGGATTTCCTCTTTTTCTGAAGAAAAGTTCGATGAGGCTATT
GAGTATTTCAAAGAAGGAGTGTTGGTCTATGAGCAAAACGGATATGAACATGCTAACCGCTTATTAGACATTCTTTTCAT
GTTAGCGAAAACGAACTTTAAGGTAAATAAGAAAACTGAAGGAACAGCTGTTTATAATCATGGACTGTCATTGGCTAAAA
ACTTAAATGATGAAGTATTAACCAAAATGTTTGATTTCCTAAATGCCCTTTACATTGACGATAACAAAGAAACGCTAAAT
GAGATTCTTACTTATTTAGAATTTAAAACAATGTTTTCCGATGTGGAGGACTTAGCAACCGACGCAGCGAAGTATTATAC
AAAAAATGAAGACCATAAAGCGGCTGGATTATTTTATGAGAAAGTGCTTTATGCCCAAAAACAAATTCAGAGAGGGGATT
GTCTTTATGAAATTTAA

Domains

Predicted by InterproScan.

Tetratricopeptide repeat (TPR_8)

(222-248)

response regulator aspartate phosphatase H, N terminal (RapH_N)

(5-65)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapC Bacillus subtilis subsp. subtilis str. 168

48.148

100

0.481
  rapF Bacillus subtilis subsp. subtilis str. 168

45.144

100

0.455