Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   V6Z34_RS07150 Genome accession   NZ_CP145817
Coordinates   1391785..1392069 (+) Length   94 a.a.
NCBI ID   WP_003154557.1    Uniprot ID   -
Organism   Bacillus velezensis strain WH-7     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 1386785..1397069
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V6Z34_RS07130 - 1388032..1388940 (+) 909 WP_406618157.1 ketopantoate reductase family protein -
  V6Z34_RS07135 - 1388970..1390202 (-) 1233 WP_025851469.1 aminopeptidase -
  V6Z34_RS07140 - 1390303..1390437 (-) 135 WP_003154559.1 protein YkpC -
  V6Z34_RS07145 mreBH 1390509..1391516 (-) 1008 WP_003154558.1 cell shape-determining protein MreBH -
  V6Z34_RS07150 abrB 1391785..1392069 (+) 285 WP_003154557.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  V6Z34_RS07155 - 1392242..1393546 (+) 1305 WP_014304932.1 ATP-binding protein -
  V6Z34_RS07160 - 1393548..1394375 (+) 828 WP_003154555.1 gamma-glutamylcyclotransferase -
  V6Z34_RS07165 ktrC 1394416..1395081 (+) 666 WP_003154554.1 Ktr system potassium transporter KtrC -
  V6Z34_RS07170 ade 1395230..1396963 (+) 1734 WP_003154552.1 adenine deaminase -

Sequence

Protein


Download         Length: 94 a.a.        Molecular weight: 10584.45 Da        Isoelectric Point: 5.2271

>NTDB_id=940091 V6Z34_RS07150 WP_003154557.1 1391785..1392069(+) (abrB) [Bacillus velezensis strain WH-7]
MKSIGVVRKVDELGRIVMPIELRRALDIAIKDSIEFFVDGDKIVLKKYKPHGICLMTGEITPENQEYGNGKIILSPEGAK
MLLEEIEEALKDRS

Nucleotide


Download         Length: 285 bp        

>NTDB_id=940091 V6Z34_RS07150 WP_003154557.1 1391785..1392069(+) (abrB) [Bacillus velezensis strain WH-7]
ATGAAATCAATTGGTGTAGTAAGAAAAGTAGACGAACTCGGGCGTATTGTCATGCCGATTGAATTGCGAAGAGCATTGGA
TATCGCTATTAAAGATAGTATTGAATTTTTCGTTGACGGAGACAAAATTGTCTTAAAAAAATACAAGCCGCACGGCATTT
GCTTAATGACCGGGGAAATTACCCCCGAAAATCAGGAGTACGGCAACGGCAAAATTATTTTAAGTCCTGAAGGAGCGAAA
ATGCTGCTTGAGGAAATCGAAGAAGCGTTAAAAGATAGATCATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(54-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-51)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

55.435

97.872

0.543