Detailed information    

insolico Bioinformatically predicted

Overview

Name   kre   Type   Regulator
Locus tag   V6Z34_RS06940 Genome accession   NZ_CP145817
Coordinates   1355430..1355894 (-) Length   154 a.a.
NCBI ID   WP_003154622.1    Uniprot ID   A0A9Q3QIJ3
Organism   Bacillus velezensis strain WH-7     
Function   regulation of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 1350430..1360894
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V6Z34_RS06920 - 1350910..1352730 (+) 1821 WP_003154628.1 PAS domain-containing protein -
  V6Z34_RS06925 - 1352706..1353925 (-) 1220 Protein_1304 aminotransferase A -
  V6Z34_RS06930 - 1354126..1354287 (-) 162 WP_007409608.1 hypothetical protein -
  V6Z34_RS06935 cheV 1354476..1355387 (+) 912 WP_014304917.1 chemotaxis protein CheV -
  V6Z34_RS06940 kre 1355430..1355894 (-) 465 WP_003154622.1 YkyB family protein Regulator
  V6Z34_RS06945 - 1356017..1357309 (-) 1293 WP_043867050.1 MFS transporter -
  V6Z34_RS06950 - 1357385..1357879 (-) 495 WP_088037173.1 L,D-transpeptidase family protein -
  V6Z34_RS06955 - 1357954..1358817 (-) 864 WP_063174788.1 metallophosphoesterase -
  V6Z34_RS06960 fadH 1358961..1359725 (+) 765 WP_003154618.1 2,4-dienoyl-CoA reductase -
  V6Z34_RS06965 - 1359836..1360381 (+) 546 Protein_1312 hypothetical protein -

Sequence

Protein


Download         Length: 154 a.a.        Molecular weight: 17784.55 Da        Isoelectric Point: 10.4864

>NTDB_id=940089 V6Z34_RS06940 WP_003154622.1 1355430..1355894(-) (kre) [Bacillus velezensis strain WH-7]
MDDHAYSKELQPTIENLSKAVYTVNRHAKTAPNPKYLYLLKKRALQKLVKEGKGKKIGLHFSNNPRFSQQQSDVLISIGD
YYFHMPPTKEDFQHLPHLGTLNQSYRNPKAQMSLTKAKNVLQKYVGLKEKPLAANRQQPAYHKPVFKKLGESYF

Nucleotide


Download         Length: 465 bp        

>NTDB_id=940089 V6Z34_RS06940 WP_003154622.1 1355430..1355894(-) (kre) [Bacillus velezensis strain WH-7]
ATGGACGACCACGCTTATTCGAAAGAGCTGCAGCCAACCATCGAGAATCTTTCAAAAGCTGTTTATACTGTGAACCGCCA
TGCAAAAACCGCCCCCAACCCTAAATACCTTTATCTGCTGAAAAAACGGGCATTACAAAAGCTTGTGAAAGAAGGCAAAG
GGAAAAAAATAGGGCTTCACTTTTCAAATAATCCCAGGTTTAGCCAACAGCAGTCAGACGTACTTATCTCTATCGGAGAC
TACTATTTTCACATGCCTCCAACAAAAGAAGACTTCCAGCATCTTCCGCATTTAGGTACGTTAAATCAATCGTACCGCAA
TCCTAAAGCACAAATGTCTTTGACAAAAGCGAAAAACGTATTGCAAAAATATGTGGGCTTAAAGGAAAAACCGCTTGCCG
CCAACAGGCAGCAGCCCGCTTATCATAAACCCGTATTTAAAAAACTTGGTGAGAGTTATTTTTAA

Domains

Predicted by InterproScan.

YkyB-like protein (YkyB)

(13-127)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kre Bacillus subtilis subsp. subtilis str. 168

92.857

100

0.929