Detailed information    

insolico Bioinformatically predicted

Overview

Name   phrC   Type   Regulator
Locus tag   V6Z34_RS01970 Genome accession   NZ_CP145817
Coordinates   411453..411572 (+) Length   39 a.a.
NCBI ID   WP_003156334.1    Uniprot ID   I2C1C3
Organism   Bacillus velezensis strain WH-7     
Function   antagonize RapC (predicted from homology)   
Competence regulation

Genomic Context

Location: 406453..416572
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V6Z34_RS01955 - 408065..408748 (+) 684 WP_003156341.1 response regulator transcription factor -
  V6Z34_RS01960 - 408735..410168 (+) 1434 WP_161625271.1 HAMP domain-containing sensor histidine kinase -
  V6Z34_RS01965 rapC 410321..411469 (+) 1149 WP_014304340.1 Rap family tetratricopeptide repeat protein Regulator
  V6Z34_RS01970 phrC 411453..411572 (+) 120 WP_003156334.1 PhrC/PhrF family phosphatase-inhibitory pheromone Regulator
  V6Z34_RS01975 - 411727..411837 (-) 111 WP_369719092.1 YjcZ family sporulation protein -
  V6Z34_RS01980 - 411917..413281 (-) 1365 WP_255764132.1 aspartate kinase -
  V6Z34_RS01985 ceuB 413696..414649 (+) 954 WP_003156332.1 ABC transporter permease Machinery gene
  V6Z34_RS01990 - 414639..415586 (+) 948 WP_077721797.1 iron chelate uptake ABC transporter family permease subunit -
  V6Z34_RS01995 - 415580..416338 (+) 759 WP_003156330.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 39 a.a.        Molecular weight: 4228.96 Da        Isoelectric Point: 8.0285

>NTDB_id=940070 V6Z34_RS01970 WP_003156334.1 411453..411572(+) (phrC) [Bacillus velezensis strain WH-7]
MKLKSKWFVICLAAAAIFTVTGAGQTDQAEFHVAERGMT

Nucleotide


Download         Length: 120 bp        

>NTDB_id=940070 V6Z34_RS01970 WP_003156334.1 411453..411572(+) (phrC) [Bacillus velezensis strain WH-7]
ATGAAATTGAAATCTAAATGGTTTGTTATTTGTTTAGCAGCCGCCGCGATTTTTACAGTGACAGGTGCAGGCCAGACAGA
TCAGGCTGAATTCCATGTAGCTGAAAGAGGAATGACGTGA

Domains

Predicted by InterproScan.

Rap-phr extracellular signalling (PhrC_PhrF)

(3-39)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB I2C1C3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  phrC Bacillus subtilis subsp. subtilis str. 168

70

100

0.718