Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   ACETQM_RS00320 Genome accession   NZ_CP169755
Coordinates   72184..72660 (-) Length   158 a.a.
NCBI ID   WP_004025728.1    Uniprot ID   -
Organism   Escherichia coli strain AH50     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 67184..77660
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACETQM_RS00280 (ACETQM_00280) setC 67634..68818 (-) 1185 WP_001172866.1 sugar efflux transporter -
  ACETQM_RS00285 (ACETQM_00285) rhuM 69217..69378 (-) 162 Protein_56 RhuM family protein -
  ACETQM_RS00290 (ACETQM_00290) - 69615..70457 (-) 843 WP_001696593.1 DUF4942 domain-containing protein -
  ACETQM_RS00295 (ACETQM_00295) - 70542..70739 (-) 198 WP_171921798.1 DUF957 domain-containing protein -
  ACETQM_RS00300 (ACETQM_00300) - 70788..70964 (-) 177 Protein_59 DUF5983 family protein -
  ACETQM_RS00305 (ACETQM_00305) cbtA 70961..71338 (-) 378 WP_000854821.1 type IV toxin-antitoxin system cytoskeleton-binding toxin CbtA -
  ACETQM_RS00310 (ACETQM_00310) - 71428..71796 (-) 369 WP_001285605.1 type IV toxin-antitoxin system YeeU family antitoxin -
  ACETQM_RS00315 (ACETQM_00315) - 71876..72097 (-) 222 Protein_62 DUF987 domain-containing protein -
  ACETQM_RS00320 (ACETQM_00320) radC 72184..72660 (-) 477 WP_004025728.1 RadC family protein Machinery gene
  ACETQM_RS00325 (ACETQM_00325) - 72676..73155 (-) 480 WP_001696591.1 antirestriction protein -
  ACETQM_RS00330 (ACETQM_00330) - 73421..74239 (-) 819 WP_001175153.1 DUF932 domain-containing protein -
  ACETQM_RS00335 (ACETQM_00335) - 74329..74562 (-) 234 WP_001278287.1 DUF905 family protein -
  ACETQM_RS00340 (ACETQM_00340) - 74568..74999 (-) 432 Protein_67 hypothetical protein -
  ACETQM_RS00345 (ACETQM_00345) - 75074..76251 (+) 1178 WP_152895938.1 IS3 family transposase -
  ACETQM_RS00350 (ACETQM_00350) - 76261..76506 (-) 246 Protein_69 hypothetical protein -
  ACETQM_RS00355 (ACETQM_00355) - 76654..77334 (-) 681 WP_001282919.1 YafY family protein -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17640.25 Da        Isoelectric Point: 6.9859

>NTDB_id=940067 ACETQM_RS00320 WP_004025728.1 72184..72660(-) (radC) [Escherichia coli strain AH50]
MQQLSFLPGEMTPGERSLIQRALKALDRHLHEPGVAFTSTHAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALALVDIRVPDHLIIGGSQVFSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=940067 ACETQM_RS00320 WP_004025728.1 72184..72660(-) (radC) [Escherichia coli strain AH50]
ATGCAGCAGCTTTCCTTTCTGCCCGGAGAGATGACACCCGGCGAGCGCAGCCTCATTCAGCGGGCCCTGAAAGCCCTGGA
CCGCCATCTTCATGAACCCGGCGTGGCCTTCACCTCCACGCATGCGGCACGGGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGTGAAGAATTCCGGGTGCTGTATCTGAATAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACTGGCACC
ATCAACCGCACAGAAGTCCATCCCCGGGAGGTGATTAAACGCGCCCTGTACCACAATGCCGCTGCCGTGGTGCTGGCGCA
CAATCACCCGTCCGGTGAAGTCACCCCCAGCAAGGCAGACCGCCTTATCACTGAGCGTCTGGTACAGGCACTGGCCCTGG
TGGATATCCGGGTACCGGACCATCTGATAATCGGTGGCAGCCAGGTTTTCTCCTTTGCGGAACACGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

54.867

71.519

0.392