Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   V6Z34_RS00250 Genome accession   NZ_CP145817
Coordinates   45549..45839 (-) Length   96 a.a.
NCBI ID   WP_169510469.1    Uniprot ID   -
Organism   Bacillus velezensis strain WH-7     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 40549..50839
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V6Z34_RS00210 darA 40566..40895 (+) 330 WP_004264734.1 cyclic di-AMP receptor DarA -
  V6Z34_RS00215 - 40908..41348 (+) 441 WP_004264730.1 YaaR family protein -
  V6Z34_RS00220 holB 41360..42349 (+) 990 WP_007409919.1 DNA polymerase III subunit delta' -
  V6Z34_RS00225 ricT 42352..43179 (+) 828 WP_004264723.1 competence/sporulation regulator complex protein RicT -
  V6Z34_RS00230 yabA 43194..43553 (+) 360 WP_004264720.1 replication initiation-control protein YabA -
  V6Z34_RS00235 - 43614..44357 (+) 744 WP_004264717.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  V6Z34_RS00240 - 44344..44643 (+) 300 WP_004264714.1 GIY-YIG nuclease family protein -
  V6Z34_RS00245 rsmI 44618..45499 (+) 882 WP_014304192.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  V6Z34_RS00250 abrB 45549..45839 (-) 291 WP_169510469.1 transition state genes transcriptional regulator AbrB Regulator
  V6Z34_RS00255 metG 46322..48313 (+) 1992 WP_015388789.1 methionine--tRNA ligase -
  V6Z34_RS00260 - 48389..49156 (+) 768 WP_004264700.1 TatD family hydrolase -
  V6Z34_RS00265 - 49291..50616 (+) 1326 WP_088005470.1 G5 and 3D domain-containing protein -

Sequence

Protein


Download         Length: 96 a.a.        Molecular weight: 10753.57 Da        Isoelectric Point: 6.3482

>NTDB_id=940063 V6Z34_RS00250 WP_169510469.1 45549..45839(-) (abrB) [Bacillus velezensis strain WH-7]
MLMKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDDNLKLAGGKLVLSKEG
AEQIISEIQNQLQNQK

Nucleotide


Download         Length: 291 bp        

>NTDB_id=940063 V6Z34_RS00250 WP_169510469.1 45549..45839(-) (abrB) [Bacillus velezensis strain WH-7]
CTGTTAATGAAATCTACTGGTATCGTACGTAAAGTTGATGAACTTGGACGCGTCGTTATCCCTATCGAACTTCGCCGTAC
ACTGGGCATCGCAGAAAAAGACGCTCTTGAAATTTATGTTGATGATGAAAAAATCATCCTTAAAAAATATAAACCAAACA
TGACTTGCCAAGTAACTGGTGAAGTTTCTGATGATAACCTTAAACTTGCCGGCGGCAAATTGGTACTCAGCAAAGAAGGC
GCTGAGCAAATCATCTCTGAAATTCAAAACCAGCTTCAAAACCAAAAATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(55-90)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(10-52)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

97.917

100

0.979