Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   V6667_RS09780 Genome accession   NZ_CP145811
Coordinates   2107546..2108781 (+) Length   411 a.a.
NCBI ID   WP_274585303.1    Uniprot ID   A0A9X4E242
Organism   Neisseria leonii strain CCUG 45853     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2102546..2113781
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V6667_RS09745 (V6667_09745) - 2102961..2103398 (+) 438 WP_274585307.1 thioesterase family protein -
  V6667_RS09750 (V6667_09750) - 2103435..2104028 (+) 594 WP_274585328.1 outer membrane lipoprotein carrier protein LolA -
  V6667_RS09755 (V6667_09755) lysA 2104403..2105626 (-) 1224 WP_274585306.1 diaminopimelate decarboxylase -
  V6667_RS09760 (V6667_09760) - 2105623..2105817 (-) 195 WP_274585305.1 lipoprotein -
  V6667_RS09765 (V6667_09765) cyaY 2105883..2106212 (+) 330 WP_274572474.1 iron donor protein CyaY -
  V6667_RS09775 (V6667_09775) - 2106735..2107421 (+) 687 WP_274585304.1 2,3-diphosphoglycerate-dependent phosphoglycerate mutase -
  V6667_RS09780 (V6667_09780) pilA 2107546..2108781 (+) 1236 WP_274585303.1 signal recognition particle-docking protein FtsY Machinery gene
  V6667_RS09785 (V6667_09785) - 2109125..2109862 (+) 738 WP_274585302.1 dienelactone hydrolase family protein -
  V6667_RS09790 (V6667_09790) - 2109944..2110663 (+) 720 WP_274585327.1 fumarylacetoacetate hydrolase family protein -
  V6667_RS09795 (V6667_09795) - 2110879..2111028 (+) 150 WP_274585301.1 hypothetical protein -
  V6667_RS09800 (V6667_09800) - 2111065..2111247 (+) 183 Protein_1898 gamma-glutamyltransferase -
  V6667_RS09805 (V6667_09805) - 2111231..2111572 (+) 342 WP_338691419.1 gamma-glutamyltransferase -
  V6667_RS09810 (V6667_09810) - 2111740..2112399 (-) 660 WP_274585300.1 NAD(P)-dependent oxidoreductase -
  V6667_RS09815 (V6667_09815) - 2112504..2112902 (+) 399 WP_274585299.1 helix-turn-helix domain-containing protein -
  V6667_RS09820 (V6667_09820) pxpB 2113044..2113697 (+) 654 WP_274585298.1 5-oxoprolinase subunit PxpB -

Sequence

Protein


Download         Length: 411 a.a.        Molecular weight: 43751.68 Da        Isoelectric Point: 4.8114

>NTDB_id=940029 V6667_RS09780 WP_274585303.1 2107546..2108781(+) (pilA) [Neisseria leonii strain CCUG 45853]
MFGLFKRRPQPEEEAAQTAQRPSETNPLLMPQETGEEPQYLSEIVQPSAEGGAEAESTPPPAENAAGTAVPHGETAAVQA
ETPIAPPAYHGHTAENPVSAGQPAEAEKTGWAARLKQGLSKSRNQMAKSLAGVFGGGKIDEALYEELETVLLTGDMGIEA
TERLMDEVRRRVSLKGLRDGAELRQALKDALYDLLEPLQSPLRLPDDGRPFVIMMAGINGAGKTTSIGKLAKYFQQQGKS
VVLAAGDTFRAAAREQLQEWGRRNGVTVISQAKGDSAAVCFDAVEAAKARGIDVVLADTAGRLPTQLHLMEEIKKVKRVL
QKTMPDAPHEIMVVLDANIGQNAVNQVIAFDDALGVTGLIVTKLDGTAKGGVLAALASARPIPVRYIGVGEGIDDLRPFD
ARAFVDALIED

Nucleotide


Download         Length: 1236 bp        

>NTDB_id=940029 V6667_RS09780 WP_274585303.1 2107546..2108781(+) (pilA) [Neisseria leonii strain CCUG 45853]
ATGTTCGGATTGTTCAAACGCCGCCCGCAACCGGAGGAAGAGGCCGCCCAAACGGCGCAGAGGCCGTCTGAAACCAACCC
CCTCTTGATGCCGCAGGAAACCGGGGAAGAGCCGCAATATTTGAGCGAGATTGTCCAACCTTCGGCAGAGGGCGGGGCAG
AGGCGGAAAGTACGCCGCCTCCTGCCGAAAATGCAGCCGGTACAGCCGTGCCGCACGGAGAGACGGCTGCCGTTCAGGCA
GAAACGCCGATTGCGCCGCCGGCATACCATGGCCATACGGCGGAAAATCCGGTATCGGCCGGGCAGCCTGCCGAAGCGGA
AAAAACCGGGTGGGCGGCGCGCCTGAAACAGGGATTGAGCAAATCGCGCAACCAGATGGCCAAATCGCTGGCCGGTGTGT
TCGGCGGCGGCAAAATCGACGAAGCCTTATATGAAGAGCTGGAAACCGTCCTGCTCACAGGCGACATGGGCATCGAAGCG
ACCGAACGGCTGATGGACGAAGTGCGCCGCCGCGTATCGCTCAAAGGCCTGCGCGACGGTGCTGAACTGCGCCAAGCCCT
GAAAGACGCGCTTTATGATTTGCTCGAACCCTTGCAGTCGCCCCTGCGGCTGCCCGACGACGGCCGCCCGTTCGTCATCA
TGATGGCGGGCATCAACGGCGCGGGCAAAACCACGTCTATCGGCAAGTTGGCGAAATATTTCCAGCAGCAGGGCAAAAGC
GTGGTGCTGGCGGCGGGCGACACCTTCCGTGCGGCGGCGCGCGAGCAGTTGCAGGAATGGGGGCGGCGCAACGGCGTAAC
CGTGATTTCGCAGGCCAAAGGCGATTCGGCGGCCGTCTGTTTCGATGCGGTCGAAGCGGCCAAGGCGCGCGGTATCGATG
TGGTGCTGGCCGACACGGCCGGCCGACTGCCCACCCAGCTGCATTTGATGGAAGAGATTAAAAAAGTCAAACGCGTATTG
CAGAAAACCATGCCCGACGCGCCGCATGAAATCATGGTGGTGCTCGATGCCAACATCGGCCAGAACGCGGTCAACCAAGT
CATCGCGTTTGATGATGCTCTGGGCGTAACCGGCCTGATTGTGACCAAGCTCGACGGCACGGCCAAAGGCGGCGTATTGG
CCGCGCTGGCTTCCGCCCGACCGATTCCCGTGCGCTACATCGGCGTGGGCGAGGGCATAGACGATTTGCGCCCCTTTGAT
GCCCGCGCTTTTGTCGATGCGCTGATTGAGGATTGA

Domains

Predicted by InterproScan.

SRP54-type protein, GTPase domain (SRP54)

(210-409)

SRP54-type protein, helical bundle domain (SRP54_N)

(126-191)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Neisseria gonorrhoeae MS11

67.133

100

0.701