Detailed information    

insolico Bioinformatically predicted

Overview

Name   recG   Type   Machinery gene
Locus tag   V6667_RS07840 Genome accession   NZ_CP145811
Coordinates   1705012..1707051 (-) Length   679 a.a.
NCBI ID   WP_274584698.1    Uniprot ID   A0A9X4IDS3
Organism   Neisseria leonii strain CCUG 45853     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1700012..1712051
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V6667_RS07825 (V6667_07825) - 1700233..1701048 (+) 816 WP_338809149.1 undecaprenyl-diphosphate phosphatase -
  V6667_RS07830 (V6667_07830) - 1701420..1702949 (-) 1530 WP_274584699.1 class I SAM-dependent methyltransferase -
  V6667_RS07835 (V6667_07835) - 1703286..1704599 (+) 1314 WP_274584978.1 CitMHS family transporter -
  V6667_RS07840 (V6667_07840) recG 1705012..1707051 (-) 2040 WP_274584698.1 ATP-dependent DNA helicase RecG Machinery gene
  V6667_RS07845 (V6667_07845) adk 1707177..1707824 (-) 648 WP_338809151.1 adenylate kinase -
  V6667_RS07850 (V6667_07850) - 1707938..1708303 (-) 366 WP_274584696.1 hypothetical protein -
  V6667_RS07855 (V6667_07855) - 1708275..1708700 (-) 426 WP_274584695.1 hypothetical protein -
  V6667_RS07860 (V6667_07860) kdsB 1708801..1709565 (-) 765 WP_274584694.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  V6667_RS07865 (V6667_07865) - 1709562..1709744 (-) 183 WP_274584693.1 Trm112 family protein -
  V6667_RS07870 (V6667_07870) lpxK 1709785..1710789 (-) 1005 WP_338809152.1 tetraacyldisaccharide 4'-kinase -

Sequence

Protein


Download         Length: 679 a.a.        Molecular weight: 74335.06 Da        Isoelectric Point: 8.4951

>NTDB_id=940026 V6667_RS07840 WP_274584698.1 1705012..1707051(-) (recG) [Neisseria leonii strain CCUG 45853]
MNPEYCKLLKINDAAAKRLAKLRLHTPWDAVLHLPLRYEDETHIMPIADAPVGVPCQVAGVVRHQEVQFKPRKQLVVQIA
DASGSVLYLRFIHFYPGHQKQLAVGRHIRAVGEIKRGFYGDEMIHPKIRDAESGGLAESLTPVYPTVSGLSQPTLRRIIQ
TALDSVSLHDTLPDELLSRLKLPPLAESLRLLHAPPPDFSIHQLSDGALPAWQRLKFDELLAQQLSMRLARQKRQSGAAE
PLRGTGVWTEKLTAALPFALTAAQQRVLAEIRADMAQPHPMHRLLQGDVGSGKTIVAALAALTAVEAGCQVAVMAPTEIL
AEQHEAKFRQWLEPLGLTVAWLSGSQRKKDKEANKAAVSDGLARIAVGTHALFQDDVAFQNLGLVIVDEQHRFGVAQRLA
LKNKGREVHQLMMSATPIPRTLAMSFFADLDVSVIDTLPPGRTPVRTRLVNSVRRAEVEGFVLNTCRKGHQAYWVCPLIE
ESETLQLQTAADTLAGLQAALPELNIGMVHGRMKPAEKAAVMAEFAAGRLNVLVATTVIEVGVDVPNAALMVIEHAERMG
LAQLHQLRGRVGRGAAESTCVLLFAEPLGETAKARLKVIYGHTDGFEIARQDLNIRGPGELLGARQSGVPMLRFADLAED
LHLLEQARATAPQLIAQRPDIVEAHLARWQGSREGYLGV

Nucleotide


Download         Length: 2040 bp        

>NTDB_id=940026 V6667_RS07840 WP_274584698.1 1705012..1707051(-) (recG) [Neisseria leonii strain CCUG 45853]
ATGAATCCCGAATACTGCAAGCTGCTCAAAATCAACGATGCCGCCGCCAAACGGCTGGCCAAACTCCGGCTGCATACGCC
GTGGGACGCGGTGCTGCACCTGCCGCTGCGCTATGAAGACGAAACGCACATTATGCCGATTGCCGATGCGCCCGTGGGCG
TGCCGTGTCAGGTGGCGGGTGTGGTGAGGCATCAGGAAGTACAGTTCAAACCGCGAAAACAGCTGGTGGTGCAGATTGCC
GATGCGTCGGGCAGCGTGCTGTACCTGCGCTTTATCCATTTTTATCCCGGCCATCAGAAGCAGTTGGCGGTGGGGCGGCA
TATCCGTGCGGTGGGCGAAATCAAGCGCGGTTTTTACGGCGACGAGATGATTCATCCGAAAATCCGCGATGCCGAAAGCG
GCGGTTTGGCCGAAAGCCTGACCCCCGTTTATCCTACCGTCAGCGGTTTGAGTCAGCCCACGCTGCGCCGCATCATTCAG
ACGGCCTTGGACAGTGTTTCCCTGCACGATACCCTGCCTGATGAGTTATTAAGCCGTCTGAAACTGCCGCCGCTGGCCGA
GAGCCTGCGCCTGCTGCACGCGCCGCCGCCCGATTTCAGTATCCATCAGTTGAGCGACGGCGCATTGCCCGCGTGGCAGC
GGTTGAAGTTTGACGAACTCCTGGCGCAGCAGCTTTCCATGCGGCTGGCGCGGCAGAAGCGGCAGAGCGGGGCGGCCGAA
CCGCTGCGCGGCACGGGCGTTTGGACGGAAAAACTGACCGCCGCCCTGCCGTTTGCGCTGACCGCCGCGCAGCAGCGCGT
GTTGGCCGAAATCCGCGCCGATATGGCGCAGCCGCACCCGATGCACCGCCTGCTGCAAGGCGATGTCGGCAGCGGCAAAA
CCATTGTCGCCGCGCTGGCCGCACTCACGGCCGTCGAAGCGGGCTGCCAGGTGGCGGTGATGGCGCCGACGGAAATTCTG
GCCGAACAGCACGAAGCCAAGTTCAGGCAATGGCTGGAACCGCTGGGCCTGACCGTGGCGTGGCTGTCGGGCAGCCAGCG
CAAAAAAGACAAAGAAGCCAACAAAGCCGCCGTTTCAGACGGCCTCGCCCGCATCGCCGTCGGCACCCACGCGCTGTTTC
AGGACGATGTCGCGTTTCAGAATCTGGGGCTGGTGATTGTCGACGAACAGCACCGCTTCGGCGTGGCGCAGCGGTTGGCG
TTGAAAAACAAAGGGCGGGAGGTGCACCAGCTGATGATGTCGGCCACACCCATTCCGCGCACGCTGGCGATGAGTTTTTT
TGCCGATTTGGACGTTTCCGTGATTGACACGCTGCCGCCGGGGCGCACGCCGGTAAGAACGCGTCTGGTAAACAGCGTGC
GGCGCGCCGAAGTGGAAGGTTTCGTGCTGAACACCTGCCGCAAAGGGCATCAGGCGTATTGGGTCTGCCCGCTGATTGAA
GAGAGCGAAACCCTGCAACTGCAAACCGCCGCCGACACGCTGGCCGGTTTGCAGGCGGCATTGCCCGAGCTGAACATCGG
CATGGTGCACGGACGCATGAAACCGGCCGAAAAAGCCGCCGTGATGGCGGAGTTTGCCGCAGGCCGTCTGAATGTGCTGG
TGGCGACCACAGTGATTGAAGTGGGTGTGGACGTGCCCAATGCCGCTTTGATGGTTATCGAACACGCCGAGCGCATGGGC
TTGGCGCAGCTGCACCAACTGCGCGGGCGGGTGGGGCGCGGCGCGGCCGAAAGCACCTGCGTGCTGCTGTTTGCCGAACC
TTTGGGCGAAACGGCCAAAGCGCGGCTCAAAGTGATATACGGACACACCGACGGCTTTGAAATCGCCCGTCAGGATTTGA
ACATACGCGGGCCGGGCGAGCTGCTCGGCGCGCGCCAAAGCGGCGTGCCGATGCTGCGTTTTGCCGACTTGGCCGAAGAC
CTGCACCTGTTGGAGCAGGCGCGTGCAACCGCGCCGCAGCTGATTGCGCAGCGGCCGGATATTGTCGAAGCCCATCTGGC
CAGATGGCAGGGCAGCCGTGAGGGCTATTTGGGCGTATAG

Domains

Predicted by InterproScan.

RecG wedge domain (RecG_wedge)

(11-165)

ATP-dependent DNA helicase RecG, domain 3, C-terminal (RecG_dom3_C)

(603-664)

DEAD/DEAH box helicase (DEAD)

(281-420)

Helicase conserved C-terminal domain (Helicase_C)

(466-574)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recG Neisseria meningitidis strain C311

82.474

100

0.825