Detailed information NTG0940014

Bioinformatically predicted

Overview

• Name: recD
• Type: Machinery gene
• Locus tag: V6667_RS04285
• Genome accession: NZ_CP145811
• Coordinates: 926388..928151 (+)
• Length: 587 a.a.
• NCBI ID: WP_338809632.1
• Uniprot ID: -
• Organism: Neisseria leonii strain CCUG 45853
• Function: homologous recombination (predicted from homology) Homologous recombination

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type	MGE coordinates	Gene coordinates	Relative position	Distance (bp)
ICE	920398..943762	926388..928151	within	0

Gene organization within MGE regions

Location: 920398..943762

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
V6667_RS04255 (V6667_04255)	-	920407..922320 (-)	1914	WP_338809623.1	ATP-binding cassette domain-containing protein	-
V6667_RS04260 (V6667_04260)	-	922401..922790 (-)	390	WP_338809625.1	MerR family DNA-binding protein	-
V6667_RS04265 (V6667_04265)	-	923012..924037 (+)	1026	WP_338809626.1	cation diffusion facilitator family transporter	-
V6667_RS04270 (V6667_04270)	-	924270..924875 (+)	606	WP_338809628.1	DUF4230 domain-containing protein	-
V6667_RS04275 (V6667_04275)	-	924933..925673 (-)	741	WP_338809629.1	MarC family protein	-
V6667_RS04280 (V6667_04280)	-	925702..926223 (-)	522	WP_338809631.1	hypothetical protein	-
V6667_RS04285 (V6667_04285)	recD	926388..928151 (+)	1764	WP_338809632.1	exodeoxyribonuclease V subunit alpha	Machinery gene
V6667_RS04290 (V6667_04290)	-	928096..928290 (-)	195	WP_274584251.1	hypothetical protein	-
V6667_RS04295 (V6667_04295)	rep	928292..930298 (-)	2007	WP_274584250.1	DNA helicase Rep	-
V6667_RS04300 (V6667_04300)	grxD	930379..930687 (-)	309	WP_274584249.1	Grx4 family monothiol glutaredoxin	-
V6667_RS04305 (V6667_04305)	-	930763..931647 (-)	885	WP_338809633.1	DMT family transporter	-
V6667_RS04310 (V6667_04310)	-	931754..932722 (-)	969	WP_338809634.1	class 1 fructose-bisphosphatase	-
V6667_RS04315 (V6667_04315)	-	932994..934079 (+)	1086	WP_338809636.1	hypothetical protein	-
V6667_RS04320 (V6667_04320)	-	934076..934900 (+)	825	WP_274584245.1	SDR family oxidoreductase	-
V6667_RS04325 (V6667_04325)	-	934998..936998 (+)	2001	WP_338809638.1	recombinase	-
V6667_RS04330 (V6667_04330)	truC	937109..937837 (-)	729	WP_338809639.1	tRNA pseudouridine(65) synthase TruC	-
V6667_RS04335 (V6667_04335)	recN	937830..939500 (-)	1671	WP_338809640.1	DNA repair protein RecN	-
V6667_RS04340 (V6667_04340)	xerD	940107..940979 (-)	873	WP_274584628.1	site-specific tyrosine recombinase XerD	-
V6667_RS04345 (V6667_04345)	-	940979..941449 (-)	471	WP_338809641.1	methylated-DNA--[protein]-cysteine S-methyltransferase	-
V6667_RS04350 (V6667_04350)	-	941465..941944 (-)	480	WP_274584240.1	DUF456 domain-containing protein	-
V6667_RS04355 (V6667_04355)	-	942182..943345 (+)	1164	WP_338809642.1	YadA-like family protein	-

Sequence

Protein

• Length: 587 a.a.
• Molecular weight: 63337.80 Da
• Isoelectric Point: 7.7479

>NTDB_id=940014 V6667_RS04285 WP_338809632.1 926388..928151(+) (recD) [Neisseria leonii strain CCUG 45853]
MNSGEWAVQAVQAANDFLARYAPQVAEICAPFVRRLFAEWQNGHSYLDLTEAERLQLAAAVPIVGMRGDTPLQLWGRRLF
LGRVWQLERDLASELLRLSAAVLPQPGEAAAAARLAAWFPDAGSRAQKEAAALALLKPLMLITGGPGTGKTTTVAKLLAL
LCDGRETPPRIALAAPTGKAAAHMARALHQALARFEPPETVRGHLAALSGQTVHRLLKLRPPQMLPAFDGRKPLPLDILV
VDEASMLDMSLLLSLLRAVPTGCRVVLLGDENQLPSVGAGAVLSALSQPTMLDGETAAVWQRLLQTAQLPAVQTAAEPPP
LASQIMRLTVSHRFGDDSGLGCLARAVASGEDDHAWAQFARFPQELAAGEAVLESRIPAFYAAQTVYWQAVDGGSTEAAF
AHQADMVMLTARRQDAAAFNAAYRRYLQQVRGVAADQVWFAGQMIMVEENHYPLGVFNGDIGLVLPDAQGQLAAYFPSAQ
GLRMLALSRLPACGDAFALTVHKSQGSEYREVWLYAPDAVSDGLTRALLYTAVTRARERFRFIGGESVFRRACLHNETRR
TALRALLAKLSAEQNTTARPNPPPPAD

Nucleotide

• Length: 1764 bp

>NTDB_id=940014 V6667_RS04285 WP_338809632.1 926388..928151(+) (recD) [Neisseria leonii strain CCUG 45853]
ATGAACAGCGGAGAATGGGCGGTACAGGCGGTACAGGCCGCAAATGATTTTCTTGCACGGTACGCGCCGCAGGTAGCGGA
GATTTGCGCGCCGTTTGTCCGCCGTCTGTTTGCCGAATGGCAGAACGGGCACAGTTATCTCGATTTGACGGAAGCGGAAC
GGTTGCAGTTGGCCGCTGCGGTGCCTATTGTCGGTATGCGCGGCGACACGCCGTTGCAGTTGTGGGGACGGCGGCTGTTT
TTGGGACGGGTGTGGCAGCTGGAACGCGATTTGGCATCGGAGCTGCTGCGCCTTTCGGCTGCGGTGCTGCCGCAGCCCGG
CGAAGCGGCGGCTGCGGCGCGTTTGGCCGCATGGTTTCCCGATGCGGGCAGCCGTGCGCAAAAAGAAGCGGCCGCTTTGG
CATTATTAAAGCCGCTGATGCTGATTACGGGCGGGCCGGGAACGGGGAAAACGACGACGGTGGCGAAACTGCTGGCCTTG
TTGTGCGACGGCAGAGAAACGCCGCCGCGCATTGCCTTGGCCGCACCGACGGGCAAGGCCGCCGCGCATATGGCGCGCGC
CCTGCATCAGGCTTTGGCGCGTTTTGAACCACCCGAAACGGTGCGCGGCCATCTGGCCGCTTTGTCGGGGCAGACGGTAC
ACCGCCTGCTCAAACTGCGTCCGCCGCAAATGCTGCCCGCGTTTGACGGCAGAAAGCCGCTGCCGTTGGATATTCTGGTG
GTGGACGAAGCCTCGATGCTGGATATGTCGTTACTGCTGTCGCTGCTGCGTGCCGTGCCGACGGGCTGCCGCGTGGTATT
GCTGGGCGATGAAAACCAGCTGCCTTCGGTGGGCGCGGGCGCGGTATTGTCCGCGCTTTCGCAACCCACGATGTTGGACG
GCGAAACTGCCGCTGTGTGGCAGCGTTTGCTGCAAACCGCCCAACTGCCCGCTGTTCAGACGGCCGCTGAACCGCCGCCG
CTGGCTTCGCAGATTATGCGGCTGACGGTCAGCCACCGTTTCGGCGACGACAGCGGCCTGGGCTGTCTGGCGCGTGCCGT
GGCATCAGGCGAAGACGACCATGCGTGGGCGCAGTTTGCCCGTTTCCCGCAGGAATTGGCGGCAGGAGAGGCCGTCTTGG
AAAGCCGGATTCCTGCTTTTTATGCCGCGCAGACGGTCTATTGGCAGGCGGTGGACGGGGGGAGCACAGAAGCCGCCTTC
GCGCATCAGGCCGATATGGTGATGCTGACGGCCAGACGGCAGGATGCGGCGGCGTTTAACGCGGCCTACCGGCGTTATCT
GCAACAGGTGCGCGGTGTGGCGGCCGATCAGGTTTGGTTTGCGGGTCAGATGATTATGGTGGAAGAAAACCATTATCCGC
TCGGAGTGTTTAACGGCGACATCGGCTTGGTACTGCCCGACGCGCAGGGACAATTGGCGGCTTATTTCCCGTCGGCGCAG
GGGCTGCGCATGCTCGCGCTCAGCCGTCTGCCGGCCTGCGGCGATGCGTTTGCGCTGACGGTGCATAAAAGTCAGGGTTC
GGAATACCGCGAAGTGTGGCTGTATGCGCCCGATGCCGTTTCAGACGGCCTCACGCGCGCGCTGCTGTATACGGCGGTTA
CGCGTGCGCGCGAACGTTTCCGCTTTATCGGCGGCGAAAGCGTATTCCGCCGCGCCTGCCTGCACAATGAAACACGGCGC
ACCGCCTTGCGCGCGCTGTTGGCCAAACTCAGCGCAGAACAAAATACCACAGCGCGGCCAAACCCGCCGCCGCCAGCAGA
TTGA

Domains

Predicted by InterproScan.

• UvrD-like helicase C-terminal domain (UvrD_C_2) (496-539)

• AAA domain (AAA_19) (127-278)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
recD	Neisseria gonorrhoeae strain FA1090	55.458	96.763	0.537