Detailed information    

insolico Bioinformatically predicted

Overview

Name   recX   Type   Regulator
Locus tag   V6667_RS03600 Genome accession   NZ_CP145811
Coordinates   786456..786917 (-) Length   153 a.a.
NCBI ID   WP_338809589.1    Uniprot ID   -
Organism   Neisseria leonii strain CCUG 45853     
Function   inhibition of RecA (predicted from homology)   
Competence regulation

Genomic Context

Location: 781456..791917
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V6667_RS03570 (V6667_03570) - 781561..781698 (-) 138 WP_274584361.1 hypothetical protein -
  V6667_RS03575 (V6667_03575) - 781732..782235 (-) 504 WP_274572348.1 DUF1543 domain-containing protein -
  V6667_RS03580 (V6667_03580) - 782324..783190 (-) 867 WP_274572347.1 DMT family transporter -
  V6667_RS03585 (V6667_03585) - 783334..783789 (-) 456 WP_338809587.1 DMT family transporter -
  V6667_RS03590 (V6667_03590) prpC 783924..785072 (-) 1149 WP_274572345.1 2-methylcitrate synthase -
  V6667_RS03595 (V6667_03595) prpB 785160..786035 (-) 876 WP_338809588.1 methylisocitrate lyase -
  V6667_RS03600 (V6667_03600) recX 786456..786917 (-) 462 WP_338809589.1 recombination regulator RecX Regulator
  V6667_RS03605 (V6667_03605) - 786962..787672 (-) 711 WP_274584355.1 phosphoglycolate phosphatase -
  V6667_RS03610 (V6667_03610) hflX 787920..789035 (+) 1116 WP_338809723.1 GTPase HflX -
  V6667_RS03615 (V6667_03615) - 789129..789926 (+) 798 WP_274584354.1 M48 family metallopeptidase -

Sequence

Protein


Download         Length: 153 a.a.        Molecular weight: 17326.61 Da        Isoelectric Point: 9.5109

>NTDB_id=940013 V6667_RS03600 WP_338809589.1 786456..786917(-) (recX) [Neisseria leonii strain CCUG 45853]
MKPTKSLRSRALEILSRQEISRAELKKKLARHAESEEEIEAVISEFADRNWQSDERFAEAYIHSKSRRHGRLRLQQALAA
KGVDADIVAPLLPGRNEELAAAVGVLEKKFAAPADNPADKLKQMRFLAYRGFDADTVRRALKTAWQEEETENG

Nucleotide


Download         Length: 462 bp        

>NTDB_id=940013 V6667_RS03600 WP_338809589.1 786456..786917(-) (recX) [Neisseria leonii strain CCUG 45853]
ATGAAACCGACCAAATCCCTGCGCAGCCGCGCCCTCGAAATCCTGTCGCGCCAAGAAATCAGCCGTGCCGAGCTGAAAAA
AAAACTGGCGCGCCATGCCGAAAGCGAGGAAGAAATCGAAGCCGTCATCAGCGAATTTGCCGACCGCAACTGGCAGTCCG
ACGAACGCTTTGCCGAAGCCTATATCCACAGCAAAAGCCGCCGCCACGGCCGTCTGCGCCTGCAACAGGCTCTGGCCGCC
AAAGGCGTGGACGCGGACATCGTCGCGCCGCTGCTGCCCGGCCGCAATGAAGAACTGGCCGCCGCCGTCGGCGTTTTGGA
AAAAAAATTCGCCGCACCGGCGGACAATCCGGCGGACAAACTCAAACAGATGCGCTTTCTCGCCTACCGAGGTTTCGATG
CCGACACCGTCCGCCGCGCCCTGAAAACGGCCTGGCAGGAAGAGGAAACAGAAAACGGCTGA

Domains

Predicted by InterproScan.

RecX family (RecX_HTH2)

(29-143)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recX Neisseria gonorrhoeae strain FA1090

66.667

96.078

0.641