Detailed information    

insolico Bioinformatically predicted

Overview

Name   recB   Type   Machinery gene
Locus tag   V6667_RS01755 Genome accession   NZ_CP145811
Coordinates   371848..375456 (-) Length   1202 a.a.
NCBI ID   WP_338809440.1    Uniprot ID   -
Organism   Neisseria leonii strain CCUG 45853     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 366848..380456
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V6667_RS01735 (V6667_01735) - 367719..368117 (-) 399 WP_274585493.1 RNA-binding S4 domain-containing protein -
  V6667_RS01740 (V6667_01740) - 368354..369313 (+) 960 WP_274585492.1 acetyl-CoA carboxylase carboxyltransferase subunit alpha -
  V6667_RS01745 (V6667_01745) tilS 369596..370936 (+) 1341 WP_274585491.1 tRNA lysidine(34) synthetase TilS -
  V6667_RS01750 (V6667_01750) - 371265..371804 (-) 540 WP_338809439.1 isochorismatase family protein -
  V6667_RS01755 (V6667_01755) recB 371848..375456 (-) 3609 WP_338809440.1 exodeoxyribonuclease V subunit beta Machinery gene
  V6667_RS01760 (V6667_01760) - 375453..375974 (-) 522 WP_274585488.1 RDD family protein -
  V6667_RS01765 (V6667_01765) miaA 376012..376971 (-) 960 WP_274585487.1 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA -
  V6667_RS01770 (V6667_01770) mutL 376985..378889 (-) 1905 WP_338809441.1 DNA mismatch repair endonuclease MutL -
  V6667_RS01775 (V6667_01775) - 379005..379952 (-) 948 WP_338809442.1 LysR substrate-binding domain-containing protein -

Sequence

Protein


Download         Length: 1202 a.a.        Molecular weight: 133792.62 Da        Isoelectric Point: 6.6594

>NTDB_id=940009 V6667_RS01755 WP_338809440.1 371848..375456(-) (recB) [Neisseria leonii strain CCUG 45853]
MTAQAFDPLDIPIQGTNLIEASAGTGKTYGIAALFSRLIVLEQMPVESVLVVTFTNAATAELKNRLRARLAEMLAVLETV
PQAADHPAALAEYCRNRHEGDDFLPQILHKALQNEAQNRVILRLKAALSQFDNAAIYTIHGFCQRILRDYAFWCESPFDI
ELADNHDRLLLTAAQDFWRKRVAADPVTAQAVFSARLTPQTLLAGLRRHIGTPALDFRRPEPADGRARADALACWQQVQP
QLAQLETLFWQVHPQLKANIYQKATFERIFAALRQTPPHQLPPAEKLDKFREEDLRAGLKKNAGIAAGTVNALNVLGHLH
TRLQQAAQEEENILILLTQDFLTHLRQTLAAEKNRRRERTFDDLLGDVHRALTDLPQAAALAAVLARNWQAALIDEFQDT
DPQQYAVFERIFVAHGRPLFLVGDPKQAIYRFRGADIHAYLYAAARADRRYTLTRNFRSHHALTGSINHLFRQKHRPFIL
ADIPYPDVSAARQNSRLHPEPPAFTVRWLHGRDNEPANKAVLDTRAAEYCADEIAAQLNQGAAGRLNIVSGSGSRPLAPG
DIAVLVRNRSQAAALADALKKRRVQSVMIRKDSVFHTAEAAALAALLQWWLNASHTDLLRFVLAGPLFKRSADELAALNE
NEAQISAYITAADHAVELWQKHGIYAALQYFSGRCGLETGLLSCGDERALTNYLQLAELLAAEDEHGRPPAALAEWLNRQ
IQTASDSDEHMLRLESDEALVKIITMHAAKGLQYPVVYCPFLWSVQAAQNDGWQVLQSAGRRELLAPSQLDAAAQEQIGA
DLLGEELRLFYVALTRAEEQLIVYAAADRQTAHHPIAHLLEGTPDTPPAETAKSYRAEKDTAAMLRRNWLRLMENAPEDT
SFAWYDTPPEAAVYTPPQSGQADGLTAREFAPRPFEAVRQTSFTALTRRREAAAPDEWHSRIDPGETAAGTPPDTPDPDS
RDAEPANGMAAFPRGIQAGLCLHGILETFDFRRPAAEQQAHAAACLAKHRYEADWLPVLLPMLDAVGRTPLNPQGVSLSS
LPPEKRLPEMDFVMHAHDFSPDRVRRALAEAGLTETCLNAAAALDFDTVRGFLNGFIDMTCLSGNGEVCIIDYKSNHLGN
HAADYRTGALNEAVAHHHYYFQAWIYAVAAARYLHIRRYPLHTVRIRYLFLRGLDGTGNGVWQWDIPAAALIPWLEQTHN
PR

Nucleotide


Download         Length: 3609 bp        

>NTDB_id=940009 V6667_RS01755 WP_338809440.1 371848..375456(-) (recB) [Neisseria leonii strain CCUG 45853]
ATGACCGCCCAAGCCTTCGACCCGCTCGATATTCCGATTCAGGGAACCAACCTTATCGAAGCCTCCGCCGGAACCGGCAA
AACCTACGGCATCGCCGCCCTATTTTCCCGCCTGATTGTGCTGGAACAGATGCCGGTAGAGAGCGTGCTGGTGGTTACCT
TTACCAACGCCGCCACCGCCGAACTGAAAAACCGTCTGCGCGCGCGGCTGGCCGAAATGCTCGCGGTACTGGAAACCGTG
CCGCAGGCGGCGGATCATCCCGCAGCCCTGGCCGAATACTGCCGAAACCGCCATGAGGGCGATGATTTTCTGCCGCAAAT
CCTGCACAAAGCCTTGCAGAATGAAGCGCAAAACCGCGTAATTCTGCGCCTGAAAGCCGCGCTGTCCCAGTTCGACAACG
CCGCCATCTACACCATTCACGGTTTCTGCCAGCGCATTTTGCGCGACTATGCCTTTTGGTGCGAATCGCCCTTCGACATC
GAGCTGGCCGACAACCACGACCGCCTGCTGCTGACGGCGGCACAGGATTTCTGGCGCAAACGCGTCGCCGCCGACCCCGT
AACCGCACAAGCGGTTTTCAGCGCACGGCTGACCCCGCAAACCCTGCTGGCCGGACTGCGCCGCCATATCGGCACGCCCG
CCCTCGATTTCAGACGGCCCGAACCGGCCGACGGCCGCGCCCGTGCCGATGCCCTCGCCTGCTGGCAGCAAGTGCAGCCG
CAACTGGCACAACTGGAAACCCTGTTTTGGCAGGTTCACCCCCAACTCAAAGCCAATATCTACCAAAAAGCCACGTTCGA
ACGCATCTTCGCCGCTTTACGGCAAACCCCGCCGCACCAACTGCCGCCTGCCGAAAAACTGGACAAATTCCGTGAAGAGG
ATTTGCGGGCCGGTTTGAAAAAAAATGCCGGCATCGCCGCCGGAACCGTAAACGCCCTGAACGTTCTGGGCCATCTGCAC
ACCCGGCTGCAACAGGCCGCACAGGAAGAAGAAAACATTCTGATTCTGCTGACGCAGGATTTTCTGACCCATCTGCGCCA
AACCTTGGCCGCCGAGAAAAACCGCCGCCGCGAGCGTACATTTGACGACTTATTGGGCGATGTCCACCGCGCCCTGACCG
ATCTGCCGCAAGCGGCCGCACTCGCTGCCGTACTTGCCCGAAACTGGCAGGCCGCCTTAATCGACGAATTTCAAGACACC
GACCCGCAGCAATACGCCGTTTTCGAGCGGATTTTTGTCGCACACGGCCGGCCGCTGTTTCTGGTGGGCGACCCCAAACA
GGCCATCTACCGCTTTCGCGGCGCGGATATCCATGCCTATCTGTATGCCGCCGCCCGAGCCGACCGCCGCTATACGCTGA
CCCGCAATTTCCGCAGCCATCACGCGCTGACCGGGAGCATCAACCATCTGTTCCGCCAAAAACACCGCCCGTTTATTCTG
GCCGACATTCCCTATCCCGACGTGTCGGCCGCACGGCAGAACAGCCGCCTGCACCCCGAACCGCCCGCTTTCACCGTGCG
CTGGCTGCACGGCAGGGACAATGAACCGGCCAACAAAGCCGTTCTGGACACCCGCGCGGCAGAATATTGCGCCGACGAAA
TCGCCGCACAGCTCAACCAAGGCGCGGCAGGCCGTCTGAATATCGTCAGTGGCAGCGGTTCCCGCCCGCTCGCGCCCGGC
GACATCGCCGTTTTGGTGCGCAACCGCAGTCAGGCCGCAGCTCTGGCCGATGCCTTGAAAAAACGGCGTGTCCAAAGCGT
GATGATCCGCAAAGATTCCGTTTTCCATACTGCCGAAGCCGCAGCGCTGGCCGCGCTGCTGCAATGGTGGCTCAACGCTT
CGCACACCGACCTGCTGCGCTTTGTGCTGGCCGGACCGCTGTTCAAACGCAGCGCGGACGAACTGGCCGCGCTCAACGAA
AACGAAGCGCAGATCAGTGCCTATATCACGGCTGCCGACCACGCCGTCGAACTGTGGCAGAAACACGGTATTTACGCCGC
CCTGCAATATTTCTCCGGCCGGTGCGGCCTGGAAACGGGGCTGCTCTCCTGCGGCGACGAACGCGCGCTCACCAATTATC
TGCAATTGGCCGAACTCTTGGCCGCCGAAGACGAACACGGCCGCCCGCCCGCCGCGCTGGCCGAATGGCTCAACCGGCAG
ATTCAGACGGCCTCCGACAGCGACGAACACATGCTGCGGCTGGAAAGCGACGAAGCCTTGGTGAAAATCATCACCATGCA
CGCGGCCAAAGGTTTGCAGTATCCCGTGGTGTACTGCCCGTTTCTGTGGTCGGTACAGGCTGCGCAAAACGACGGCTGGC
AGGTGCTGCAATCGGCCGGCCGCCGCGAACTGCTCGCCCCGTCCCAACTGGATGCCGCCGCGCAGGAACAAATCGGAGCC
GACCTGCTGGGCGAAGAACTGCGGCTGTTTTATGTCGCCCTCACCCGCGCCGAAGAGCAATTAATCGTGTATGCGGCGGC
CGACCGCCAAACCGCACACCACCCGATCGCCCACCTGCTCGAAGGTACGCCCGATACCCCGCCGGCCGAAACCGCCAAAA
GCTACCGTGCGGAAAAAGACACCGCCGCCATGCTGCGCCGAAACTGGCTGCGCCTGATGGAAAACGCGCCCGAAGACACA
TCGTTCGCCTGGTACGACACCCCGCCCGAAGCCGCAGTTTATACACCGCCGCAAAGCGGACAGGCAGACGGCCTCACCGC
GCGGGAATTTGCACCGCGTCCGTTTGAAGCTGTCCGCCAAACCAGCTTCACCGCCCTCACCCGCCGCCGCGAAGCGGCCG
CGCCGGACGAATGGCACAGCCGCATCGACCCGGGCGAAACCGCTGCCGGCACGCCGCCCGACACGCCGGACCCGGACAGC
CGCGACGCCGAACCGGCAAACGGCATGGCCGCCTTCCCGCGCGGCATACAGGCCGGCCTGTGCCTGCACGGCATACTGGA
AACCTTCGATTTCAGACGGCCTGCCGCCGAACAGCAGGCCCATGCGGCCGCCTGTCTGGCGAAACACCGCTATGAAGCGG
ATTGGCTGCCGGTTTTACTGCCCATGCTCGATGCCGTCGGCCGCACCCCCCTCAACCCGCAGGGCGTGAGCCTGAGCAGC
CTGCCGCCGGAAAAACGCCTGCCCGAAATGGATTTTGTCATGCACGCACACGACTTTTCGCCCGACCGGGTGCGCCGTGC
GCTGGCAGAGGCCGGTTTGACCGAAACCTGCCTGAATGCGGCGGCCGCACTCGATTTCGACACGGTGCGCGGTTTTCTCA
ACGGCTTTATCGACATGACCTGCCTGAGCGGCAACGGCGAAGTGTGCATCATCGACTACAAATCCAACCATCTGGGCAAC
CATGCCGCCGACTACCGCACCGGCGCGCTGAATGAAGCCGTGGCGCACCACCACTATTACTTTCAGGCTTGGATTTACGC
CGTGGCCGCCGCCCGCTATCTGCATATCCGCCGCTACCCGCTGCACACCGTGCGTATCCGCTATCTTTTCCTGCGCGGGC
TGGACGGTACGGGCAACGGCGTGTGGCAGTGGGACATTCCCGCCGCCGCCCTGATACCGTGGCTTGAACAGACACACAAT
CCCCGCTAA

Domains

Predicted by InterproScan.

UvrD/REP helicase N-terminal domain (UvrD-helicase)

(11-445)

UvrD-like helicase C-terminal domain (UvrD_C)

(451-638)

UvrD-like helicase C-terminal domain (UvrD_C)

(717-825)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recB Neisseria gonorrhoeae strain FA1090

52.286

100

0.523