Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA/sms   Type   Machinery gene
Locus tag   G6L19_RS03605 Genome accession   NZ_CP169707
Coordinates   731487..732887 (-) Length   466 a.a.
NCBI ID   WP_003512347.1    Uniprot ID   A0A1B9V3Y2
Organism   Agrobacterium tumefaciens strain IL30     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 726487..737887
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G6L19_RS03585 (G6L19_003585) cysS 726670..728055 (-) 1386 WP_065704806.1 cysteine--tRNA ligase -
  G6L19_RS03590 (G6L19_003590) - 728281..729021 (-) 741 WP_065704804.1 SDR family NAD(P)-dependent oxidoreductase -
  G6L19_RS03595 (G6L19_003595) purF 729172..730665 (-) 1494 WP_003512343.1 amidophosphoribosyltransferase -
  G6L19_RS03600 (G6L19_003600) - 730804..731391 (-) 588 WP_003512345.1 CvpA family protein -
  G6L19_RS03605 (G6L19_003605) radA/sms 731487..732887 (-) 1401 WP_003512347.1 DNA repair protein RadA Machinery gene
  G6L19_RS03610 (G6L19_003610) - 733085..733351 (-) 267 WP_065704800.1 type II toxin-antitoxin system ParD family antitoxin -
  G6L19_RS03615 (G6L19_003615) alr 733417..734592 (-) 1176 WP_065704798.1 alanine racemase -
  G6L19_RS03620 (G6L19_003620) - 734679..735536 (+) 858 WP_065704796.1 AraC family transcriptional regulator -
  G6L19_RS03625 (G6L19_003625) - 735629..736333 (+) 705 WP_065704794.1 AzlC family ABC transporter permease -
  G6L19_RS03630 (G6L19_003630) - 736330..736632 (+) 303 WP_003512357.1 AzlD family protein -

Sequence

Protein


Download         Length: 466 a.a.        Molecular weight: 49183.10 Da        Isoelectric Point: 6.5901

>NTDB_id=939972 G6L19_RS03605 WP_003512347.1 731487..732887(-) (radA/sms) [Agrobacterium tumefaciens strain IL30]
MAKAKTQFVCQNCGTVHTRWAGKCEGCGEWNTIVEEDPMGGIGSGPGKTPKKGRAVALTALSGEIEEAPRIPTGISELDR
ATGGGFVRGSAVLIGGDPGIGKSTLLMQAAAALSRRGHRVIYVSGEEAVAQVRLRAQRLGAAETDVLLAAETNVEDILAT
ISEGKRPDLVIIDSIQTLWSDTADSAPGTVTQVRTGVQAMIRYAKQTGATMVLVGHVTKEGQIAGPRVVEHMVDAVLYFE
GDRGHHYRILRTVKNRFGPTDEIGVFEMSDRGLREVSNPSELFLGERNEKSPGAAVFAGMEGTRPILVEVQALVAATSLG
TPRRAVVGWDSSRLAMILAVLEAHCGVKLGQHDVYLNVAGGYRISEPAADMAIASALVSSLAGLALPADCVYFGEISLSG
AVRPVSHTGQRLKEAEKLGFSAALLPSASAELPKAGKGRWTEIESLPDLVARIAGSGNRFKQVEDD

Nucleotide


Download         Length: 1401 bp        

>NTDB_id=939972 G6L19_RS03605 WP_003512347.1 731487..732887(-) (radA/sms) [Agrobacterium tumefaciens strain IL30]
ATGGCCAAAGCCAAGACCCAATTCGTGTGCCAGAACTGCGGCACGGTTCATACCCGCTGGGCGGGAAAATGCGAAGGCTG
CGGCGAATGGAATACCATCGTCGAAGAAGACCCGATGGGCGGCATCGGTTCCGGCCCCGGCAAGACGCCGAAAAAAGGCC
GGGCGGTCGCGCTTACGGCGCTTTCGGGCGAGATCGAGGAGGCGCCGCGCATTCCGACCGGCATCAGCGAACTGGACCGG
GCAACCGGTGGCGGTTTCGTGCGCGGTTCGGCGGTGTTGATCGGCGGCGATCCCGGCATCGGCAAATCGACCCTGCTGAT
GCAGGCGGCAGCTGCCCTTTCACGGCGCGGACATCGCGTCATCTATGTTTCTGGCGAAGAAGCGGTAGCGCAGGTGCGTC
TGCGCGCCCAGCGGCTGGGTGCGGCGGAAACCGACGTGCTGCTGGCGGCAGAAACCAATGTCGAGGATATTCTGGCGACG
ATTTCCGAGGGCAAGCGCCCCGATCTCGTCATCATCGATTCCATCCAGACGCTATGGAGCGACACGGCCGATTCCGCTCC
CGGCACGGTAACGCAGGTGCGCACCGGCGTGCAGGCAATGATCCGTTACGCCAAGCAGACGGGCGCGACCATGGTGCTGG
TGGGCCATGTGACCAAGGAAGGCCAGATCGCCGGTCCCCGCGTGGTGGAGCACATGGTCGACGCCGTGCTTTATTTCGAA
GGCGACCGCGGCCACCATTACCGCATTCTGCGCACCGTCAAGAACCGCTTCGGGCCGACGGACGAGATCGGCGTGTTTGA
AATGTCCGATCGCGGATTGCGCGAGGTCTCAAACCCGTCCGAACTGTTCCTTGGCGAGCGCAACGAGAAATCTCCCGGTG
CCGCAGTCTTTGCCGGCATGGAGGGCACCCGTCCCATTCTGGTCGAGGTGCAGGCGCTGGTCGCGGCCACCTCGCTCGGC
ACGCCGCGCCGCGCCGTGGTCGGCTGGGACAGTTCGCGGCTCGCCATGATCCTTGCCGTGCTTGAAGCCCATTGCGGCGT
GAAGCTCGGTCAGCACGACGTTTATCTGAACGTCGCCGGCGGATACCGCATTTCCGAACCGGCTGCGGATATGGCGATAG
CTTCTGCGCTGGTTTCCTCGCTTGCCGGTCTTGCCCTGCCCGCCGATTGCGTCTATTTCGGCGAGATCAGCCTGTCGGGC
GCGGTACGGCCAGTCTCGCATACGGGCCAGCGTTTGAAAGAAGCTGAAAAACTCGGTTTCTCCGCCGCACTTCTGCCGTC
TGCTTCGGCTGAATTGCCGAAAGCGGGCAAGGGGCGCTGGACGGAAATAGAAAGCCTGCCGGACCTCGTGGCGCGCATCG
CCGGTTCCGGCAACCGGTTCAAACAGGTTGAGGACGACTAA

Domains

Predicted by InterProScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Subunit ChlI of Mg-chelatase (ChlI)

(343-428)

AAA domain (AAA_25)

(83-221)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1B9V3Y2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA/sms Bacillus subtilis subsp. subtilis str. 168

49.774

94.85

0.472
  radA Streptococcus pneumoniae Rx1

46.606

94.85

0.442
  radA Streptococcus pneumoniae D39

46.606

94.85

0.442
  radA Streptococcus pneumoniae R6

46.606

94.85

0.442
  radA Streptococcus pneumoniae TIGR4

46.606

94.85

0.442
  radA Streptococcus mitis SK321

46.774

93.133

0.436
  radA Streptococcus mitis NCTC 12261

46.544

93.133

0.433