Detailed information NTG0939923

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: ACE168_RS14090
• Genome accession: NZ_CP169634
• Coordinates: 2852967..2853959 (-)
• Length: 330 a.a.
• NCBI ID: WP_000081588.1
• Uniprot ID: Q540P0
• Organism: Escherichia coli str. K-12 substr. MG1655 strain K-12
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 2847967..2858959

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACE168_RS14070 (ACE168_14070)	otnK	2848743..2849909 (+)	1167	WP_001393459.1	3-oxo-tetronate kinase	-
ACE168_RS14075 (ACE168_14075)	ygbL	2850001..2850639 (+)	639	WP_001278994.1	aldolase	-
ACE168_RS14080 (ACE168_14080)	ygbM	2850644..2851420 (+)	777	WP_001136934.1	HPr family phosphocarrier protein	-
ACE168_RS14085 (ACE168_14085)	ygbN	2851509..2852873 (+)	1365	WP_000104441.1	GntP family transporter	-
ACE168_RS14090 (ACE168_14090)	rpoS	2852967..2853959 (-)	993	WP_000081588.1	RNA polymerase sigma factor RpoS	Regulator
ACE168_RS14095 (ACE168_14095)	nlpD	2854022..2855116 (-)	1095	WP_306174120.1	murein hydrolase activator NlpD	-
ACE168_RS14100 (ACE168_14100)	pcm	2855301..2855927 (-)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
ACE168_RS14105 (ACE168_14105)	surE	2855921..2856682 (-)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
ACE168_RS14110 (ACE168_14110)	truD	2856663..2857712 (-)	1050	WP_000568943.1	tRNA pseudouridine(13) synthase TruD	-
ACE168_RS14115 (ACE168_14115)	ispF	2857709..2858188 (-)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
ACE168_RS14120 (ACE168_14120)	ispD	2858188..2858898 (-)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37971.86 Da
• Isoelectric Point: 4.5886

>NTDB_id=939923 ACE168_RS14090 WP_000081588.1 2852967..2853959(-) (rpoS) [Escherichia coli str. K-12 substr. MG1655 strain K-12]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEQEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=939923 ACE168_RS14090 WP_000081588.1 2852967..2853959(-) (rpoS) [Escherichia coli str. K-12 substr. MG1655 strain K-12]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAACAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

• Sigma-70 region 3 (Sigma70_r3) (174-248)

3D structure

• AlphaFold DB: Q540P0

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715