Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsX   Type   Machinery gene
Locus tag   R8616_RS01560 Genome accession   NZ_AP028382
Coordinates   310209..310805 (+) Length   198 a.a.
NCBI ID   WP_002779313.1    Uniprot ID   A0ABP2NPG9
Organism   Campylobacter coli strain BCH-11051     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 305209..315805
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R8616_RS01545 (B11051_03010) ctsR 307916..308227 (+) 312 WP_002779316.1 hypothetical protein Machinery gene
  R8616_RS01550 (B11051_03020) ctsD 308205..309623 (+) 1419 WP_002779315.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  R8616_RS01555 (B11051_03030) ctsP 309616..310212 (+) 597 WP_052780105.1 ATP-binding protein Machinery gene
  R8616_RS01560 (B11051_03040) ctsX 310209..310805 (+) 597 WP_002779313.1 CDC27 family protein Machinery gene
  R8616_RS01565 (B11051_03050) ctsE 310798..312360 (+) 1563 WP_052782729.1 GspE/PulE family protein Machinery gene
  R8616_RS01570 (B11051_03060) ctsF 312347..313522 (+) 1176 WP_025399236.1 type II secretion system F family protein Machinery gene
  R8616_RS01575 (B11051_03070) - 313519..314283 (-) 765 WP_002781157.1 TSUP family transporter -
  R8616_RS01580 (B11051_03080) - 314286..315050 (-) 765 WP_002781156.1 TIGR02757 family protein -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 23760.21 Da        Isoelectric Point: 5.2295

>NTDB_id=93989 R8616_RS01560 WP_002779313.1 310209..310805(+) (ctsX) [Campylobacter coli strain BCH-11051]
MNIEERVRELEDKYKRYLLKKYFKFLFIFAILIACMLISFFMVQDFYKQKALALEALEYKKTLNWQITQAQIANEKNKIL
QERLSKDESKDELEEELKTQIDIYSKILNISDLKRSFYQNPSYQKAMNLATQYYENKDYEKSIFWSLKANDIDRKNSDSW
VLFAKAKQALGKDEEAKQALDTYVSYYGLIEFDKEIDD

Nucleotide


Download         Length: 597 bp        

>NTDB_id=93989 R8616_RS01560 WP_002779313.1 310209..310805(+) (ctsX) [Campylobacter coli strain BCH-11051]
ATGAATATAGAAGAAAGAGTGCGCGAGCTTGAGGATAAATATAAAAGATATTTATTGAAAAAATATTTTAAGTTTTTATT
TATCTTTGCCATTTTGATAGCATGCATGCTTATAAGCTTTTTTATGGTGCAAGATTTTTACAAACAAAAGGCCTTAGCTT
TAGAAGCTTTAGAATATAAAAAAACACTCAATTGGCAAATTACACAAGCGCAAATTGCAAATGAAAAAAATAAAATTTTA
CAAGAAAGATTATCCAAAGATGAAAGCAAAGATGAGTTAGAAGAGGAGTTGAAAACTCAAATTGATATTTATTCTAAGAT
TTTAAATATAAGTGATTTAAAAAGGAGTTTTTACCAAAATCCAAGCTATCAAAAAGCCATGAATTTAGCTACTCAGTATT
ATGAAAACAAAGATTATGAAAAGTCTATTTTTTGGTCTTTAAAAGCCAATGACATCGATAGAAAAAATTCAGACTCATGG
GTTTTATTTGCCAAGGCTAAACAAGCTTTAGGAAAAGATGAGGAGGCTAAGCAAGCTTTGGATACTTATGTAAGTTATTA
TGGCTTGATTGAATTTGATAAGGAAATAGATGATTGA

Domains

Predicted by InterProScan.

Anaphase-promoting complex, cyclosome, subunit 3 (ANAPC3)

(116-182)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsX Campylobacter jejuni subsp. jejuni 81-176

55.128

78.788

0.434

Multiple sequence alignment