Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   V6S68_RS20170 Genome accession   NZ_CP145726
Coordinates   3862287..3862721 (-) Length   144 a.a.
NCBI ID   WP_003158057.1    Uniprot ID   -
Organism   Bacillus anthracis strain CVCC40202     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 3857287..3867721
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V6S68_RS20155 (V6S68_20155) - 3858361..3858918 (+) 558 WP_000062079.1 PadR family transcriptional regulator -
  V6S68_RS20160 (V6S68_20160) metE 3859536..3861824 (+) 2289 WP_001007635.1 5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase -
  V6S68_RS20165 (V6S68_20165) comJ 3861861..3862250 (-) 390 WP_000424033.1 competence protein ComJ -
  V6S68_RS20170 (V6S68_20170) nucA/comI 3862287..3862721 (-) 435 WP_003158057.1 DNA-entry nuclease Machinery gene
  V6S68_RS20175 (V6S68_20175) - 3862958..3863707 (+) 750 WP_000388464.1 DUF3967 domain-containing protein -
  V6S68_RS20180 (V6S68_20180) kinB 3863761..3865035 (-) 1275 WP_000420390.1 sporulation sensor histidine kinase KinB -
  V6S68_RS20185 (V6S68_20185) - 3865346..3865546 (+) 201 WP_000929284.1 hypothetical protein -
  V6S68_RS20190 (V6S68_20190) - 3865669..3866832 (+) 1164 WP_000434598.1 aminotransferase A -

Sequence

Protein


Download         Length: 144 a.a.        Molecular weight: 16028.39 Da        Isoelectric Point: 8.4331

>NTDB_id=939779 V6S68_RS20170 WP_003158057.1 3862287..3862721(-) (nucA/comI) [Bacillus anthracis strain CVCC40202]
MKQLKGIIISIIAILSILVAVYEVLVPEETSTKKTNAYDQVLEFPKERYPETGKHITDAIKEGHSEVCTIDRGGAADRRK
LSLAPYPSKKGYDRDEWPMAMCKEGGKGAHIEYISPADNRGAGSWVGNKLDKYLDGTRVKFDVK

Nucleotide


Download         Length: 435 bp        

>NTDB_id=939779 V6S68_RS20170 WP_003158057.1 3862287..3862721(-) (nucA/comI) [Bacillus anthracis strain CVCC40202]
ATGAAGCAATTAAAAGGTATTATCATTTCAATTATTGCAATTCTTTCTATTTTAGTAGCGGTTTATGAAGTACTTGTTCC
AGAGGAAACAAGTACAAAAAAAACAAATGCGTATGATCAAGTTCTAGAATTTCCGAAAGAGAGATATCCAGAAACAGGGA
AACATATTACGGATGCGATAAAGGAAGGACATTCAGAAGTTTGTACAATCGACCGTGGTGGCGCTGCGGATAGAAGAAAG
TTATCGTTAGCTCCATACCCATCAAAAAAAGGGTATGATCGTGATGAATGGCCAATGGCGATGTGTAAAGAAGGCGGAAA
AGGAGCACATATCGAATATATAAGTCCAGCAGATAACCGCGGAGCAGGGTCTTGGGTAGGAAATAAGTTAGATAAATACC
TAGATGGTACGCGTGTGAAATTTGACGTAAAGTAG

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(48-139)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

69.912

78.472

0.549