Detailed information    

insolico Bioinformatically predicted

Overview

Name   comC   Type   Machinery gene
Locus tag   V6D45_RS13890 Genome accession   NZ_CP145722
Coordinates   2721822..2722568 (-) Length   248 a.a.
NCBI ID   WP_079288051.1    Uniprot ID   -
Organism   Bacillus spizizenii strain kcgeb_S11     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2716822..2727568
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V6D45_RS13865 (V6D45_13870) mreC 2717229..2718101 (-) 873 WP_268392743.1 rod shape-determining protein MreC -
  V6D45_RS13870 (V6D45_13875) mreB 2718132..2719145 (-) 1014 WP_014114656.1 cell shape-determining protein MreB -
  V6D45_RS13875 (V6D45_13880) radC 2719237..2719932 (-) 696 WP_041521028.1 DNA repair protein RadC -
  V6D45_RS13880 (V6D45_13885) - 2719969..2720538 (-) 570 WP_014114658.1 Maf family nucleotide pyrophosphatase -
  V6D45_RS13885 (V6D45_13890) - 2720690..2721688 (-) 999 WP_338442938.1 SPOR domain-containing protein -
  V6D45_RS13890 (V6D45_13895) comC 2721822..2722568 (-) 747 WP_079288051.1 A24 family peptidase Machinery gene
  V6D45_RS13895 (V6D45_13900) - 2722705..2723997 (-) 1293 WP_338442939.1 folylpolyglutamate synthase/dihydrofolate synthase family protein -
  V6D45_RS13900 (V6D45_13905) valS 2724057..2726699 (-) 2643 WP_338444528.1 valine--tRNA ligase -
  V6D45_RS13905 (V6D45_13910) - 2727147..2727338 (+) 192 WP_010330262.1 hypothetical protein -

Sequence

Protein


Download         Length: 248 a.a.        Molecular weight: 26498.17 Da        Isoelectric Point: 9.9495

>NTDB_id=939696 V6D45_RS13890 WP_079288051.1 2721822..2722568(-) (comC) [Bacillus spizizenii strain kcgeb_S11]
MLPILFLLGLILGSFYYTAGCRIPLHISIITPRSACSFCRRTLTAAELIPILSFLFQKGKCKSCGRRISFMYPAAELVTA
CLFAAAGIRFGSSPELLPAVVFISLLIIVVVTDIHFMLIPNRILIFFLPFLAAARLISPLDSWYASLLGAAAGFLFLSLI
AAITHGGIGGGDIKLFAVIGFMLGVKMLAAAFFFSVLIGALYGAAAVLTGRLAKRQPLPFAPAIAAGSILAYLYGESIIS
FYMKMALG

Nucleotide


Download         Length: 747 bp        

>NTDB_id=939696 V6D45_RS13890 WP_079288051.1 2721822..2722568(-) (comC) [Bacillus spizizenii strain kcgeb_S11]
ATGCTACCCATTCTTTTTCTCCTCGGGCTGATCCTTGGTTCATTTTATTATACGGCCGGGTGCCGTATCCCCTTGCATAT
ATCCATTATCACGCCCCGTTCGGCATGCTCGTTTTGCCGGCGGACATTAACCGCGGCAGAATTAATTCCTATCCTGTCAT
TCCTTTTCCAAAAGGGCAAATGTAAAAGCTGCGGACGTAGAATTTCTTTTATGTATCCCGCGGCAGAGCTTGTGACAGCG
TGTTTATTTGCCGCCGCAGGAATACGCTTTGGCTCATCTCCGGAACTATTGCCTGCTGTTGTGTTTATCTCTCTTCTCAT
CATTGTTGTAGTGACAGATATTCATTTTATGCTGATTCCAAATCGAATATTGATTTTCTTTCTTCCCTTTTTGGCGGCAG
CAAGATTGATTTCTCCGCTTGATTCCTGGTATGCCAGCCTGTTAGGTGCGGCCGCCGGATTTCTTTTCCTGTCCTTAATT
GCCGCAATCACCCATGGAGGAATAGGGGGAGGAGATATTAAATTATTTGCGGTGATTGGCTTTATGCTTGGTGTGAAAAT
GCTGGCAGCTGCCTTTTTCTTTTCTGTTTTGATAGGTGCATTGTATGGAGCGGCAGCTGTCCTAACTGGAAGACTCGCCA
AAAGGCAGCCGCTTCCCTTTGCCCCCGCAATTGCGGCAGGAAGCATTTTAGCCTATTTATACGGTGAGTCTATTATTTCT
TTTTATATGAAAATGGCATTGGGCTGA

Domains

Predicted by InterproScan.

Type IV leader peptidase family (Peptidase_A24)

(101-203)

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(7-90)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comC Bacillus subtilis subsp. subtilis str. 168

91.935

100

0.919