Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   R8634_RS07000 Genome accession   NZ_AP028381
Coordinates   1353420..1354388 (+) Length   322 a.a.
NCBI ID   WP_317656035.1    Uniprot ID   -
Organism   Campylobacter jejuni strain BCH-11000     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1348420..1359388
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R8634_RS06975 (B11000_13800) cdsA 1349330..1350055 (-) 726 WP_002834214.1 phosphatidate cytidylyltransferase -
  R8634_RS06980 (B11000_13810) - 1350064..1350402 (-) 339 WP_002852397.1 hypothetical protein -
  R8634_RS06985 (B11000_13820) - 1350404..1351711 (-) 1308 WP_317656029.1 NFACT family protein -
  R8634_RS06990 (B11000_13830) mobA 1351773..1352348 (+) 576 WP_317656031.1 molybdenum cofactor guanylyltransferase -
  R8634_RS06995 (B11000_13840) pldA 1352345..1353334 (+) 990 WP_057096540.1 phospholipase A -
  R8634_RS07000 (B11000_13850) ceuB 1353420..1354388 (+) 969 WP_317656035.1 ABC transporter permease Machinery gene
  R8634_RS07005 (B11000_13860) ceuC 1354381..1355319 (+) 939 WP_002859639.1 iron chelate uptake ABC transporter family permease subunit -
  R8634_RS07010 (B11000_13870) ceuD 1355316..1356071 (+) 756 WP_002858409.1 ABC transporter ATP-binding protein -
  R8634_RS07015 (B11000_13880) ceuB 1356084..1357076 (+) 993 WP_002859640.1 enterochelin ABC transporter substrate-binding protein CeuB -
  R8634_RS07025 (B11000_13890) - 1357302..1357856 (-) 555 WP_002884169.1 membrane protein -

Sequence

Protein


Download         Length: 322 a.a.        Molecular weight: 35489.39 Da        Isoelectric Point: 9.6678

>NTDB_id=93969 R8634_RS07000 WP_317656035.1 1353420..1354388(+) (ceuB) [Campylobacter jejuni strain BCH-11000]
MFFKHILSLKVLIALLLFFGMISLFIGVISINVKDILNLNSTQLEIITLTRIPRLIAILLTGMSLSICGLIMQQLTQNKF
VSPTTAGTMDCAKFGILISLIFFAGASFFTQTIIASVFALLGSFIFIQILRKIKLKDVIFVPLIGLMFGGIISAITTFFA
YALNYIQNIQGWLQGSMANVMQGNYELLYISLPFFILAYFLAHKITIVGMGEDIALNLGISYNGILFLGLMIVSIITSLV
IVSVGIIPFLGLIIPNLVALYLGDNLRKNLIYIALCGALFLLVCDIISRLVIFPFEMPLSITTGVLGSLIFIFLLLKRKV
YA

Nucleotide


Download         Length: 969 bp        

>NTDB_id=93969 R8634_RS07000 WP_317656035.1 1353420..1354388(+) (ceuB) [Campylobacter jejuni strain BCH-11000]
TTGTTTTTTAAGCATATATTGAGTTTAAAAGTGCTTATAGCTTTACTTTTATTCTTTGGAATGATAAGTTTATTTATAGG
AGTTATCAGTATCAATGTAAAAGATATTCTTAATCTTAACTCCACTCAACTAGAAATCATAACTCTCACAAGAATTCCTA
GACTTATAGCAATTTTACTCACAGGAATGAGTCTTAGTATATGCGGGCTTATCATGCAACAACTCACGCAAAATAAATTC
GTTTCCCCAACTACAGCAGGAACTATGGATTGTGCTAAATTTGGCATACTTATTTCTTTAATATTTTTTGCTGGAGCGTC
TTTTTTTACTCAAACTATCATTGCTTCTGTATTTGCACTTTTGGGTTCTTTTATATTTATCCAAATTTTAAGAAAAATCA
AACTCAAAGATGTGATTTTTGTACCTTTGATAGGCTTGATGTTTGGAGGCATTATTAGTGCTATAACTACTTTTTTTGCC
TATGCTTTAAATTATATACAAAATATCCAAGGCTGGTTACAAGGCAGTATGGCAAATGTTATGCAAGGAAATTATGAATT
ACTTTACATTTCTTTGCCATTTTTTATACTTGCTTATTTTTTAGCTCACAAAATCACCATAGTTGGCATGGGCGAAGATA
TAGCTTTAAATCTTGGAATTTCTTATAATGGGATATTATTTTTAGGCTTGATGATTGTAAGCATTATCACTAGCTTAGTG
ATTGTAAGCGTTGGAATTATCCCTTTTTTAGGGCTAATTATCCCAAATTTAGTAGCTCTTTATCTAGGTGATAATCTTAG
AAAAAATCTTATCTATATAGCACTTTGTGGAGCTTTGTTTTTACTTGTTTGCGATATCATTTCAAGACTTGTCATCTTTC
CTTTTGAAATGCCTTTAAGTATCACTACAGGTGTTTTAGGATCTTTAATCTTTATCTTTCTTTTGCTAAAAAGGAAAGTT
TATGCGTAA

Domains

Predicted by InterProScan.

FecCD transport family (FecCD)

(15-317)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

99.068

100

0.991

Multiple sequence alignment