Detailed information NTG0939679

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: ACEW9Q_RS13810
• Genome accession: NZ_CP169569
• Coordinates: 2794343..2795335 (-)
• Length: 330 a.a.
• NCBI ID: WP_000081588.1
• Uniprot ID: Q540P0
• Organism: Escherichia coli strain MC1061
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 2789343..2800335

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACEW9Q_RS13790 (ACEW9Q_13790)	otnK	2790119..2791285 (+)	1167	WP_001393459.1	3-oxo-tetronate kinase	-
ACEW9Q_RS13795 (ACEW9Q_13795)	ygbL	2791377..2792015 (+)	639	WP_001278991.1	aldolase	-
ACEW9Q_RS13800 (ACEW9Q_13800)	ygbM	2792020..2792796 (+)	777	WP_001136934.1	HPr family phosphocarrier protein	-
ACEW9Q_RS13805 (ACEW9Q_13805)	ygbN	2792885..2794249 (+)	1365	WP_000104441.1	GntP family transporter	-
ACEW9Q_RS13810 (ACEW9Q_13810)	rpoS	2794343..2795335 (-)	993	WP_000081588.1	RNA polymerase sigma factor RpoS	Regulator
ACEW9Q_RS13815 (ACEW9Q_13815)	nlpD	2795398..2796492 (-)	1095	WP_306174120.1	murein hydrolase activator NlpD	-
ACEW9Q_RS13820 (ACEW9Q_13820)	pcm	2796677..2797303 (-)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
ACEW9Q_RS13825 (ACEW9Q_13825)	surE	2797297..2798058 (-)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
ACEW9Q_RS13830 (ACEW9Q_13830)	truD	2798039..2799088 (-)	1050	WP_000568943.1	tRNA pseudouridine(13) synthase TruD	-
ACEW9Q_RS13835 (ACEW9Q_13835)	ispF	2799085..2799564 (-)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
ACEW9Q_RS13840 (ACEW9Q_13840)	ispD	2799564..2800274 (-)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37971.86 Da
• Isoelectric Point: 4.5886

>NTDB_id=939679 ACEW9Q_RS13810 WP_000081588.1 2794343..2795335(-) (rpoS) [Escherichia coli strain MC1061]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEQEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=939679 ACEW9Q_RS13810 WP_000081588.1 2794343..2795335(-) (rpoS) [Escherichia coli strain MC1061]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAACAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

• Sigma-70 region 3 (Sigma70_r3) (174-248)

3D structure

• AlphaFold DB: Q540P0

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715