Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   V6D45_RS12330 Genome accession   NZ_CP145722
Coordinates   2444340..2446070 (-) Length   576 a.a.
NCBI ID   WP_061186894.1    Uniprot ID   A0A9Q4E5T3
Organism   Bacillus spizizenii strain kcgeb_S11     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2439340..2451070
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V6D45_RS12305 (V6D45_12310) - 2439937..2440071 (+) 135 WP_003236876.1 hypothetical protein -
  V6D45_RS12310 (V6D45_12315) - 2440144..2441262 (+) 1119 WP_268392633.1 NADH-dependent flavin oxidoreductase -
  V6D45_RS12315 (V6D45_12320) - 2441479..2441658 (-) 180 WP_268456013.1 hypothetical protein -
  V6D45_RS12320 (V6D45_12325) spo0A 2441805..2442608 (-) 804 WP_003226427.1 sporulation transcription factor Spo0A Regulator
  V6D45_RS12325 (V6D45_12330) spoIVB 2442886..2444166 (-) 1281 WP_014114356.1 SpoIVB peptidase -
  V6D45_RS12330 (V6D45_12335) recN 2444340..2446070 (-) 1731 WP_061186894.1 DNA repair protein RecN Machinery gene
  V6D45_RS12335 (V6D45_12340) argR 2446106..2446555 (-) 450 WP_014114358.1 arginine repressor ArgR -
  V6D45_RS12340 (V6D45_12345) - 2446652..2447497 (-) 846 WP_072566534.1 TlyA family RNA methyltransferase -
  V6D45_RS12345 (V6D45_12350) dxs 2447494..2449395 (-) 1902 WP_338442826.1 1-deoxy-D-xylulose-5-phosphate synthase -
  V6D45_RS12350 (V6D45_12355) - 2449576..2450466 (-) 891 WP_338442827.1 polyprenyl synthetase family protein -
  V6D45_RS12355 (V6D45_12360) - 2450456..2450710 (-) 255 WP_003226409.1 exodeoxyribonuclease VII small subunit -

Sequence

Protein


Download         Length: 576 a.a.        Molecular weight: 64667.46 Da        Isoelectric Point: 4.7405

>NTDB_id=939679 V6D45_RS12330 WP_061186894.1 2444340..2446070(-) (recN) [Bacillus spizizenii strain kcgeb_S11]
MLAELSIKNFAIIEELTVSFERGLTVLTGETGAGKSIIIDAISLLVGGRGSSEFVRYGETKAELEGLFLLESGHPVFDVC
TEQGIDVSDEMIVMRRDISTSGKSVCRVNGKLVTIASLREIGRLLLDIHGQHDNQLLMEDENHLQLLDKFAGAEVESALQ
AYQEGYHRYMKLLKKLKQLSESEQEMAHRLDLIQFQLEEIESAKLELNEDEQLQEERQQISNFEKIYESLQNAYNALRSE
QGGLDWVGMASAQLEDISDINEPLKKLSESVSNSYYLLEDATFQMRNMLDELEYDPERLNYIETRLNEIKQLKRKYGATV
EEILEYASKIEEEIDQIENRDSHLQSVKKELDSVGKDVAVEAANVSQIRKAWAKKLADEIHRELKSLYMEKSTFDTEFKI
RTASRNEEAPIVNGQPVQLTDQGIDLVKFLISTNTGEPLKSLSKVASGGELSRVMLAIKSIFSSQQDVTSIIFDEVDTGV
SGRVAQAIAEKIHKVSIGSQVLCITHLPQVAAMADTHLYIAKELKDGRTTTRVKPLSKQEKVVEIGRMIAGVEVTDLTKR
HAKELLKQADQVKTTG

Nucleotide


Download         Length: 1731 bp        

>NTDB_id=939679 V6D45_RS12330 WP_061186894.1 2444340..2446070(-) (recN) [Bacillus spizizenii strain kcgeb_S11]
TTGTTAGCTGAACTATCGATTAAAAACTTTGCCATTATTGAGGAACTGACGGTTTCTTTTGAACGAGGGCTCACGGTTTT
AACAGGAGAAACCGGAGCCGGCAAATCCATCATCATAGACGCCATTTCTCTTTTAGTCGGAGGCCGCGGATCATCTGAAT
TTGTCAGATATGGAGAGACAAAAGCTGAGCTTGAAGGGCTGTTTCTATTGGAGAGCGGCCACCCCGTTTTTGACGTATGC
ACTGAGCAGGGAATCGACGTTTCAGACGAAATGATCGTCATGAGAAGGGATATCAGCACGAGCGGAAAAAGCGTTTGCCG
TGTAAATGGCAAGCTTGTCACGATTGCTTCGTTAAGAGAGATCGGCAGGCTTTTATTAGATATTCACGGGCAGCACGATA
ACCAGCTGTTAATGGAGGACGAAAATCATCTCCAGCTTTTGGACAAGTTTGCCGGAGCCGAAGTAGAAAGCGCGCTTCAA
GCATATCAGGAAGGGTACCATCGGTATATGAAGCTGCTTAAAAAGCTAAAACAGCTTTCTGAAAGCGAACAGGAAATGGC
CCACCGCCTGGACCTTATTCAATTTCAGCTCGAAGAAATTGAATCGGCAAAGCTCGAGCTTAATGAAGATGAACAGCTCC
AAGAAGAGCGCCAGCAAATTTCAAACTTTGAGAAGATCTATGAATCGCTGCAAAATGCATATAACGCGCTTCGCAGTGAG
CAGGGCGGACTGGACTGGGTCGGAATGGCATCAGCGCAGCTCGAAGATATATCCGATATTAACGAACCGCTGAAAAAACT
GTCTGAAAGTGTGTCGAACTCTTACTATCTGCTGGAGGACGCTACATTTCAGATGAGAAATATGCTGGATGAGCTTGAAT
ATGACCCGGAACGCCTGAATTATATTGAGACGCGTCTTAATGAAATCAAACAGCTGAAACGAAAATACGGTGCAACTGTT
GAGGAGATTTTGGAATACGCCTCTAAAATTGAAGAAGAGATTGACCAAATTGAAAACAGGGACAGCCATCTTCAAAGCGT
GAAGAAGGAGCTTGACTCAGTCGGCAAAGATGTTGCGGTGGAAGCGGCAAATGTTTCACAAATCCGGAAAGCATGGGCGA
AAAAGCTGGCCGATGAGATTCATCGAGAATTAAAAAGCCTCTATATGGAAAAATCAACTTTTGATACGGAATTTAAGATC
AGAACAGCGTCTCGCAATGAGGAGGCGCCGATTGTAAACGGCCAGCCTGTTCAGCTGACTGACCAAGGAATTGATCTGGT
CAAGTTTTTAATTTCAACCAACACAGGCGAGCCTTTGAAATCCCTTTCGAAAGTCGCTTCCGGAGGGGAGCTGTCCCGGG
TGATGCTTGCCATCAAAAGCATTTTTTCCTCGCAGCAGGATGTGACGTCGATTATATTCGATGAGGTAGATACCGGTGTA
AGCGGCAGAGTCGCGCAGGCAATCGCTGAGAAGATCCATAAAGTCTCAATAGGATCACAAGTGCTGTGTATTACACACTT
GCCTCAGGTAGCTGCCATGGCCGATACGCATCTTTATATTGCGAAGGAGTTAAAAGACGGCAGAACCACGACACGTGTCA
AGCCGCTGTCTAAGCAGGAAAAGGTAGTGGAAATCGGGCGCATGATTGCCGGAGTCGAAGTAACAGACTTGACGAAACGC
CATGCGAAAGAACTTCTAAAACAAGCGGATCAAGTCAAAACAACTGGGTAA

Domains

Predicted by InterproScan.

AAA domain (AAA_23)

(4-229)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

97.049

100

0.97