Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   V6D45_RS11315 Genome accession   NZ_CP145722
Coordinates   2261936..2262556 (+) Length   206 a.a.
NCBI ID   WP_242733889.1    Uniprot ID   A0A9Q4E3L9
Organism   Bacillus spizizenii strain kcgeb_S11     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2256936..2267556
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V6D45_RS11275 (V6D45_11280) - 2258076..2258582 (-) 507 WP_061187822.1 PTS glucose transporter subunit IIA -
  V6D45_RS11280 (V6D45_11285) - 2258720..2259139 (+) 420 WP_268455955.1 Hsp20/alpha crystallin family protein -
  V6D45_RS11285 (V6D45_11290) - 2259160..2259528 (-) 369 WP_087986948.1 YppG family protein -
  V6D45_RS11290 (V6D45_11295) - 2259715..2259903 (+) 189 WP_003225611.1 YppF family protein -
  V6D45_RS11295 (V6D45_11300) - 2259943..2260314 (-) 372 WP_003225610.1 YppE family protein -
  V6D45_RS11300 (V6D45_11305) - 2260360..2260605 (-) 246 WP_014114178.1 DUF5446 family protein -
  V6D45_RS11305 (V6D45_11310) sspM 2260804..2260908 (+) 105 WP_003225606.1 acid-soluble spore protein SspM -
  V6D45_RS11310 (V6D45_11315) - 2260933..2261895 (-) 963 WP_268442681.1 DUF2515 domain-containing protein -
  V6D45_RS11315 (V6D45_11320) recU 2261936..2262556 (+) 621 WP_242733889.1 Holliday junction resolvase RecU Machinery gene
  V6D45_RS11320 (V6D45_11325) - 2262578..2265322 (+) 2745 WP_338442680.1 PBP1A family penicillin-binding protein -
  V6D45_RS11325 (V6D45_11330) - 2265396..2265890 (-) 495 WP_338442682.1 YpoC family protein -
  V6D45_RS11330 (V6D45_11335) nth 2265887..2266546 (-) 660 WP_338442684.1 endonuclease III -
  V6D45_RS11335 (V6D45_11340) dnaD 2266565..2267263 (-) 699 WP_072566472.1 DNA replication protein DnaD -

Sequence

Protein


Download         Length: 206 a.a.        Molecular weight: 23943.09 Da        Isoelectric Point: 9.6510

>NTDB_id=939677 V6D45_RS11315 WP_242733889.1 2261936..2262556(+) (recU) [Bacillus spizizenii strain kcgeb_S11]
MIRYPNGKTFQPKHSVSSQNSQKRAPSYSNRGMTLEDDLNETNKYYLTNQIAVIHKKPTPVQIVNVHYPKRSAAVIKEAY
FKQSSTTDYNGIYKGRYIDFEAKETKNKTSFPLQNFHDHQIEHMKQVKAQDGICFVIISAFDQVYFLEADKLFFFWDRKE
KNGRKSIRKDELEEAAYPISLGYAPRIDYISIIEQLYFSPSSSAKG

Nucleotide


Download         Length: 621 bp        

>NTDB_id=939677 V6D45_RS11315 WP_242733889.1 2261936..2262556(+) (recU) [Bacillus spizizenii strain kcgeb_S11]
GTGATTCGGTATCCTAACGGAAAAACGTTCCAGCCGAAACATTCGGTTTCATCCCAAAACAGTCAGAAAAGGGCCCCGTC
TTACAGTAATCGCGGAATGACCCTCGAAGATGACTTAAACGAAACGAATAAGTATTATCTGACAAACCAAATTGCCGTCA
TACACAAAAAGCCGACACCTGTTCAAATTGTAAATGTCCATTATCCAAAAAGAAGCGCCGCAGTGATTAAAGAAGCTTAC
TTTAAACAATCATCGACAACAGATTATAACGGAATTTACAAAGGGCGGTATATTGATTTTGAGGCGAAAGAAACGAAAAA
CAAGACCTCTTTCCCCCTGCAGAATTTCCATGACCATCAAATCGAGCATATGAAGCAGGTAAAGGCTCAAGACGGTATTT
GTTTTGTTATTATATCCGCTTTCGACCAGGTTTATTTTTTGGAAGCCGATAAGCTGTTTTTTTTCTGGGACAGAAAAGAA
AAAAACGGCAGAAAATCAATTCGAAAAGATGAGTTAGAGGAAGCGGCGTATCCGATTTCTCTTGGATACGCACCTAGAAT
TGATTATATTAGTATTATTGAACAGCTTTATTTTTCGCCATCATCTAGTGCGAAAGGTTGA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(31-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

98.544

100

0.985