Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   V6D45_RS07790 Genome accession   NZ_CP145722
Coordinates   1520143..1520421 (+) Length   92 a.a.
NCBI ID   WP_041520942.1    Uniprot ID   A0A9Q4E6G3
Organism   Bacillus spizizenii strain kcgeb_S11     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 1515143..1525421
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V6D45_RS07770 (V6D45_07775) - 1516334..1517245 (+) 912 WP_338444284.1 ketopantoate reductase family protein -
  V6D45_RS07775 (V6D45_07780) - 1517272..1518504 (-) 1233 WP_338444285.1 aminopeptidase -
  V6D45_RS07780 (V6D45_07785) - 1518616..1518750 (-) 135 WP_077670699.1 protein YkpC -
  V6D45_RS07785 (V6D45_07790) mreBH 1518852..1519859 (-) 1008 WP_014113648.1 cell shape-determining protein MreBH -
  V6D45_RS07790 (V6D45_07795) abrB 1520143..1520421 (+) 279 WP_041520942.1 transcriptional regulator AbhA Regulator
  V6D45_RS07795 (V6D45_07800) kinC 1520612..1521898 (+) 1287 WP_338444287.1 two-component sensor histidine kinase KinC -
  V6D45_RS07800 (V6D45_07805) - 1521916..1522743 (+) 828 WP_338444288.1 gamma-glutamylcyclotransferase -
  V6D45_RS07805 (V6D45_07810) ktrC 1522815..1523480 (+) 666 WP_003222311.1 Ktr system potassium transporter KtrC -
  V6D45_RS07810 (V6D45_07815) ade 1523637..1525370 (+) 1734 WP_338444289.1 adenine deaminase -

Sequence

Protein


Download         Length: 92 a.a.        Molecular weight: 10270.09 Da        Isoelectric Point: 5.8872

>NTDB_id=939672 V6D45_RS07790 WP_041520942.1 1520143..1520421(+) (abrB) [Bacillus spizizenii strain kcgeb_S11]
MKSIGVVRKVDELGRIVMPIELRRALDIAIKDSIEFFVDGEKIILKKYKPHGVCLMTGEITSENKEYGNGKITLSPEGAQ
LLLEEIQAALKE

Nucleotide


Download         Length: 279 bp        

>NTDB_id=939672 V6D45_RS07790 WP_041520942.1 1520143..1520421(+) (abrB) [Bacillus spizizenii strain kcgeb_S11]
ATGAAATCAATAGGTGTTGTAAGAAAAGTAGATGAATTAGGGCGTATTGTCATGCCGATAGAATTAAGACGGGCACTTGA
TATTGCTATAAAAGACAGTATTGAGTTTTTTGTTGACGGAGAAAAAATTATCTTGAAAAAGTACAAACCTCATGGCGTCT
GTTTAATGACCGGAGAAATCACTTCAGAAAATAAAGAATACGGCAACGGTAAAATTACGTTAAGTCCTGAAGGTGCACAG
CTGCTTCTCGAAGAAATTCAAGCCGCTTTAAAAGAATAA

Domains

Predicted by InterproScan.

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-51)

AbrB C-terminal domain (AbrB_C)

(53-88)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

59.341

98.913

0.587