Detailed information    

insolico Bioinformatically predicted

Overview

Name   rok   Type   Regulator
Locus tag   V6D45_RS07665 Genome accession   NZ_CP145722
Coordinates   1494477..1495061 (+) Length   194 a.a.
NCBI ID   WP_061187376.1    Uniprot ID   -
Organism   Bacillus spizizenii strain kcgeb_S11     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1489477..1500061
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V6D45_RS07635 (V6D45_07640) dapD 1489662..1490372 (+) 711 WP_003218680.1 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase -
  V6D45_RS07640 (V6D45_07645) - 1490442..1491566 (+) 1125 WP_338444275.1 N-acetyldiaminopimelate deacetylase -
  V6D45_RS07645 (V6D45_07650) - 1491628..1491873 (+) 246 WP_003218684.1 YkuS family protein -
  V6D45_RS07650 (V6D45_07655) mscT 1491909..1492712 (-) 804 WP_061187375.1 small-conductance mechanosensitive channel protein MscT -
  V6D45_RS07655 (V6D45_07660) ahpA 1492956..1493498 (+) 543 WP_338444276.1 biofilm-specific peroxidase AhpA -
  V6D45_RS07660 (V6D45_07665) ykuV 1493568..1494026 (+) 459 WP_014113626.1 thiol-disulfide oxidoreductase YkuV -
  V6D45_RS07665 (V6D45_07670) rok 1494477..1495061 (+) 585 WP_061187376.1 transcriptional regulator Rok Regulator
  V6D45_RS07670 (V6D45_07675) - 1495102..1496067 (-) 966 WP_268442749.1 sporulation protein -
  V6D45_RS07675 (V6D45_07680) - 1496203..1496820 (+) 618 WP_338444278.1 molybdenum cofactor guanylyltransferase -
  V6D45_RS07680 (V6D45_07685) - 1496852..1497871 (+) 1020 WP_338444279.1 molybdopterin-synthase adenylyltransferase MoeB -
  V6D45_RS07685 (V6D45_07690) glp 1497889..1499181 (+) 1293 WP_014113632.1 gephyrin-like molybdotransferase Glp -
  V6D45_RS07690 (V6D45_07695) mobB 1499142..1499675 (+) 534 WP_014113633.1 molybdopterin-guanine dinucleotide biosynthesis protein B -

Sequence

Protein


Download         Length: 194 a.a.        Molecular weight: 22113.10 Da        Isoelectric Point: 9.7036

>NTDB_id=939671 V6D45_RS07665 WP_061187376.1 1494477..1495061(+) (rok) [Bacillus spizizenii strain kcgeb_S11]
MFNEREALRLRLEQLNEAEVKVIREYQIERDKIYAKLRELDRNGSPSEIKKDFRSEKKPDSLPVLAELAAQEIRSYQPQS
QQQSVQPQLQSISSLPAGIPDGTTRRRRGTARPGSKAAKLREAAIKTLKRHNAAIKSSELQKEIEKESGLEIPNMTTFMQ
SLIKMYPEVKKPYRGQYILEGEIESAESAESAND

Nucleotide


Download         Length: 585 bp        

>NTDB_id=939671 V6D45_RS07665 WP_061187376.1 1494477..1495061(+) (rok) [Bacillus spizizenii strain kcgeb_S11]
ATGTTTAATGAAAGAGAAGCTTTGCGCTTGCGGTTAGAACAATTAAATGAAGCTGAAGTGAAAGTCATTCGTGAATATCA
AATTGAACGTGATAAAATATACGCAAAATTAAGAGAGCTAGACAGAAATGGAAGCCCTTCCGAAATCAAAAAGGATTTCC
GTTCTGAAAAAAAACCTGACTCTCTGCCGGTTCTCGCTGAGCTTGCGGCTCAGGAAATCAGAAGCTATCAGCCGCAATCA
CAGCAGCAGTCTGTTCAGCCTCAGCTTCAATCTATTTCCTCTCTTCCTGCCGGTATACCAGACGGAACAACACGAAGAAG
AAGAGGGACGGCAAGACCGGGATCAAAAGCAGCTAAGCTGCGTGAAGCTGCCATTAAAACATTAAAACGCCACAATGCGG
CGATTAAGAGCTCCGAGCTTCAAAAAGAGATTGAAAAAGAAAGCGGTCTTGAAATCCCTAATATGACAACGTTTATGCAA
AGCTTAATTAAAATGTACCCGGAAGTGAAAAAGCCGTATCGCGGCCAGTACATTTTAGAAGGCGAAATTGAATCAGCTGA
ATCTGCAGAATCAGCAAATGATTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rok Bacillus subtilis subsp. subtilis str. 168

100

97.423

0.974