Detailed information    

insolico Bioinformatically predicted

Overview

Name   kre   Type   Regulator
Locus tag   V6D45_RS07565 Genome accession   NZ_CP145722
Coordinates   1478626..1479090 (-) Length   154 a.a.
NCBI ID   WP_003232406.1    Uniprot ID   G4NVM0
Organism   Bacillus spizizenii strain kcgeb_S11     
Function   regulation of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 1473626..1484090
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V6D45_RS07545 (V6D45_07550) kinA 1474094..1475914 (+) 1821 WP_338444270.1 sporulation histidine kinase KinA -
  V6D45_RS07550 (V6D45_07555) - 1475924..1477105 (-) 1182 WP_003218653.1 aminotransferase A -
  V6D45_RS07555 (V6D45_07560) - 1477307..1477468 (-) 162 WP_003218655.1 hypothetical protein -
  V6D45_RS07560 (V6D45_07565) cheV 1477674..1478585 (+) 912 WP_338444271.1 chemotaxis protein CheV -
  V6D45_RS07565 (V6D45_07570) kre 1478626..1479090 (-) 465 WP_003232406.1 YkyB family protein Regulator
  V6D45_RS07570 (V6D45_07575) - 1479215..1480507 (-) 1293 WP_326199056.1 MFS transporter -
  V6D45_RS07575 (V6D45_07580) - 1480583..1481077 (-) 495 WP_268454170.1 L,D-transpeptidase family protein -
  V6D45_RS07580 (V6D45_07585) - 1481134..1481994 (-) 861 WP_114150604.1 metallophosphoesterase -
  V6D45_RS07585 (V6D45_07590) fadH 1482136..1482900 (+) 765 WP_014113617.1 2,4-dienoyl-CoA reductase -

Sequence

Protein


Download         Length: 154 a.a.        Molecular weight: 17895.71 Da        Isoelectric Point: 10.3545

>NTDB_id=939670 V6D45_RS07565 WP_003232406.1 1478626..1479090(-) (kre) [Bacillus spizizenii strain kcgeb_S11]
MDDHAYTKDLQPTVENLSKAVYTVNRHAKTAPNPKYLYLLKKRALQKLVKEGKGKKIGLHFSKNPRFSQQQSDVLISIGD
YYFHMPPTKEDFEHLPHLGTLNQSYRNPKAQMSLTKAKHLLQEYVGMKEKPLVPNRQQPAYHKPVFKKLGESYF

Nucleotide


Download         Length: 465 bp        

>NTDB_id=939670 V6D45_RS07565 WP_003232406.1 1478626..1479090(-) (kre) [Bacillus spizizenii strain kcgeb_S11]
ATGGACGACCATGCATATACGAAAGATCTGCAGCCAACCGTAGAAAATCTTTCAAAAGCAGTTTACACTGTGAACCGCCA
TGCAAAAACCGCCCCCAACCCTAAATACCTATACCTGCTGAAAAAACGGGCTTTGCAAAAGCTTGTCAAAGAAGGTAAAG
GAAAGAAAATAGGGCTTCATTTTTCAAAAAACCCAAGGTTTAGCCAACAGCAATCGGACGTGCTTATTTCAATCGGAGAC
TACTATTTTCACATGCCTCCAACTAAAGAAGACTTCGAACATCTTCCGCATTTAGGTACACTTAATCAATCGTACCGAAA
TCCTAAAGCTCAAATGTCTTTAACAAAAGCGAAACACCTGTTGCAAGAATATGTCGGCATGAAAGAAAAACCGCTTGTGC
CAAATCGCCAGCAGCCAGCTTATCATAAACCTGTTTTTAAAAAGCTTGGCGAGAGTTACTTTTAA

Domains

Predicted by InterproScan.

YkyB-like protein (YkyB)

(14-128)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NVM0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kre Bacillus subtilis subsp. subtilis str. 168

100

100

1