Detailed information    

insolico Bioinformatically predicted

Overview

Name   med   Type   Regulator
Locus tag   V6D45_RS06100 Genome accession   NZ_CP145722
Coordinates   1200813..1201766 (+) Length   317 a.a.
NCBI ID   WP_061188356.1    Uniprot ID   -
Organism   Bacillus spizizenii strain kcgeb_S11     
Function   regulation of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 1195813..1206766
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V6D45_RS06075 (V6D45_06080) argF 1197641..1198600 (+) 960 WP_338444120.1 ornithine carbamoyltransferase -
  V6D45_RS06080 (V6D45_06085) - 1198686..1198865 (+) 180 WP_003224549.1 YjzC family protein -
  V6D45_RS06085 (V6D45_06090) - 1198911..1199096 (-) 186 WP_003224551.1 YjzD family protein -
  V6D45_RS06090 (V6D45_06095) - 1199347..1200081 (+) 735 WP_014113354.1 hypothetical protein -
  V6D45_RS06095 (V6D45_06100) - 1200165..1200722 (+) 558 WP_072183379.1 hypothetical protein -
  V6D45_RS06100 (V6D45_06105) med 1200813..1201766 (+) 954 WP_061188356.1 transcriptional regulator Med Regulator
  V6D45_RS06105 (V6D45_06110) comZ 1201781..1201972 (+) 192 WP_338444121.1 ComG operon transcriptional repressor ComZ Regulator
  V6D45_RS06110 (V6D45_06115) - 1202002..1202229 (-) 228 WP_072183380.1 hypothetical protein -
  V6D45_RS06115 (V6D45_06120) fabH 1202395..1203333 (+) 939 WP_014113357.1 beta-ketoacyl-ACP synthase III -
  V6D45_RS06120 (V6D45_06125) fabF 1203358..1204599 (+) 1242 WP_268392652.1 beta-ketoacyl-ACP synthase II -
  V6D45_RS06125 (V6D45_06130) - 1204675..1205460 (+) 786 WP_338444122.1 DUF2268 domain-containing protein -
  V6D45_RS06130 (V6D45_06135) appD 1205649..1206635 (+) 987 WP_338444123.1 oligopeptide ABC transporter ATP-binding protein AppD -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 35358.97 Da        Isoelectric Point: 4.7208

>NTDB_id=939661 V6D45_RS06100 WP_061188356.1 1200813..1201766(+) (med) [Bacillus spizizenii strain kcgeb_S11]
MITRLVMIFSVLLLLSGCGQTPFKGKIEKVGMLFPDTINDLVWGTKGYKGLLNIQSKYNVDVYYKEGVKTDEDIINAIED
FHKRGVNLLYGHGSEYAEVFNLVSEDYPDMEFVISNAKAKADNVTSVHFSGEAMGFFGGMTAARMSKTNQVGVIASFTWQ
PEVDGFIKGAKYENPNIEVNTKYTDHWDDDTTAVKLYQKMKNEGADVVYPAGDGYNVPVIQQIKKDGLYAIGYVTDQSDL
GENTVLTSTVQNVDKAYEIIAEQFNKGTLEGGDHYYDLKTGVVEMGTFSPLVDKDFQQRIAKLIKTYNKTGELPKNE

Nucleotide


Download         Length: 954 bp        

>NTDB_id=939661 V6D45_RS06100 WP_061188356.1 1200813..1201766(+) (med) [Bacillus spizizenii strain kcgeb_S11]
TTGATCACAAGGCTTGTCATGATCTTTTCTGTCCTCCTTTTATTAAGCGGTTGTGGACAAACTCCGTTTAAAGGAAAAAT
TGAGAAGGTCGGCATGCTCTTTCCTGATACGATTAATGACCTCGTATGGGGCACAAAAGGGTATAAAGGATTACTGAATA
TACAATCAAAATATAATGTGGATGTCTACTATAAAGAAGGCGTTAAAACAGATGAAGATATTATAAATGCGATTGAGGAT
TTTCATAAGCGGGGCGTTAATCTCCTCTATGGCCATGGGAGTGAATATGCAGAGGTGTTTAACTTGGTCAGTGAAGATTA
TCCAGATATGGAATTCGTCATTTCTAATGCTAAAGCAAAAGCTGATAATGTGACGAGTGTCCATTTCAGCGGCGAAGCAA
TGGGTTTCTTTGGAGGAATGACAGCTGCCCGTATGTCGAAAACGAATCAGGTCGGCGTGATTGCTTCCTTTACGTGGCAG
CCGGAGGTTGACGGTTTTATCAAAGGGGCCAAATATGAAAATCCGAATATAGAAGTAAACACAAAATATACGGATCATTG
GGATGATGATACGACAGCAGTAAAGCTTTATCAGAAAATGAAGAACGAAGGCGCGGATGTTGTGTATCCCGCCGGAGATG
GGTATAATGTTCCTGTCATTCAGCAAATCAAAAAAGACGGCCTTTATGCCATCGGATACGTCACAGATCAATCGGATCTG
GGCGAGAATACCGTATTAACCAGCACGGTGCAAAATGTGGACAAGGCTTATGAAATCATCGCTGAGCAATTCAACAAAGG
CACCCTTGAAGGCGGCGATCATTACTACGACCTGAAAACGGGAGTTGTTGAAATGGGAACATTCAGCCCGCTTGTCGATA
AAGACTTTCAGCAAAGAATCGCCAAGCTGATCAAAACGTACAACAAAACAGGCGAACTGCCAAAAAACGAGTAA

Domains

Predicted by InterproScan.

ABC transporter substrate-binding protein PnrA-like (Bmp)

(27-317)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  med Bacillus subtilis subsp. subtilis str. 168

98.107

100

0.981