Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK   Type   Regulator
Locus tag   V6D45_RS05705 Genome accession   NZ_CP145722
Coordinates   1122555..1123133 (+) Length   192 a.a.
NCBI ID   WP_338444077.1    Uniprot ID   -
Organism   Bacillus spizizenii strain kcgeb_S11     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1117555..1128133
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V6D45_RS05685 (V6D45_05690) hemAT 1118067..1119365 (-) 1299 WP_014113275.1 heme-based aerotactic transducer HemAT -
  V6D45_RS05690 (V6D45_05695) - 1119504..1121033 (-) 1530 WP_338444076.1 FAD-dependent oxidoreductase -
  V6D45_RS05695 (V6D45_05700) - 1121145..1122002 (+) 858 WP_061188307.1 SDR family oxidoreductase -
  V6D45_RS05700 (V6D45_05705) - 1122029..1122262 (-) 234 WP_014113278.1 IDEAL domain-containing protein -
  V6D45_RS05705 (V6D45_05710) comK 1122555..1123133 (+) 579 WP_338444077.1 competence transcription factor ComK Regulator
  V6D45_RS05710 (V6D45_05715) - 1123180..1124079 (-) 900 WP_338444495.1 SDR family oxidoreductase -
  V6D45_RS05715 (V6D45_05720) - 1124297..1124566 (+) 270 WP_014113282.1 excalibur calcium-binding domain-containing protein -
  V6D45_RS05720 (V6D45_05725) - 1124609..1126078 (-) 1470 WP_338444078.1 sodium:solute symporter -
  V6D45_RS05725 (V6D45_05730) - 1126075..1126275 (-) 201 WP_338444079.1 DUF3311 domain-containing protein -
  V6D45_RS05730 (V6D45_05735) - 1126500..1126862 (-) 363 WP_072183342.1 hypothetical protein -
  V6D45_RS05735 (V6D45_05740) - 1127016..1127639 (+) 624 WP_014113286.1 TVP38/TMEM64 family protein -

Sequence

Protein


Download         Length: 192 a.a.        Molecular weight: 22366.68 Da        Isoelectric Point: 7.6610

>NTDB_id=939658 V6D45_RS05705 WP_338444077.1 1122555..1123133(+) (comK) [Bacillus spizizenii strain kcgeb_S11]
MSQKTDAPLEAYEVNGATIAVLPEEIDGKICSKIIEKDCVFYVSMKPLQIVDRSCRFFGSSYAGRKAGTYEVTKISHKPP
IMVDPSNQIFLFPTLSSTRPQCGWISHVHVKEFKPTEFDDTEVTFSNGKTMELPISCNSFENQVYRTAWLRTKFQDRIEH
RVPKRQEFMLYPKEERTKMIYDFILRELGERY

Nucleotide


Download         Length: 579 bp        

>NTDB_id=939658 V6D45_RS05705 WP_338444077.1 1122555..1123133(+) (comK) [Bacillus spizizenii strain kcgeb_S11]
ATGAGTCAGAAAACAGACGCACCTTTAGAAGCGTATGAAGTGAACGGCGCAACAATTGCCGTGCTGCCAGAAGAAATCGA
TGGCAAAATTTGTTCCAAAATTATTGAAAAAGACTGCGTGTTTTACGTCAGCATGAAGCCGCTGCAAATTGTCGACAGAA
GCTGCCGGTTTTTCGGATCAAGCTATGCGGGAAGAAAAGCAGGAACTTATGAAGTGACAAAAATTTCACACAAACCGCCG
ATCATGGTGGACCCTTCGAATCAAATCTTTTTATTCCCTACACTTTCTTCGACAAGACCCCAATGCGGCTGGATTTCCCA
TGTGCATGTGAAAGAATTCAAACCGACTGAATTCGACGATACGGAAGTGACGTTTTCGAACGGGAAAACGATGGAGCTGC
CGATCTCCTGTAATTCGTTCGAGAACCAGGTATACCGGACAGCATGGCTAAGAACCAAATTCCAAGACAGAATCGAACAC
CGCGTGCCGAAACGGCAGGAATTTATGCTGTATCCGAAGGAAGAGCGTACGAAGATGATTTATGATTTTATTTTGCGTGA
GCTCGGGGAGCGGTATTAG

Domains

Predicted by InterproScan.

ComK protein (ComK)

(10-158)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK Bacillus subtilis subsp. subtilis str. 168

97.396

100

0.974