Detailed information    

insolico Bioinformatically predicted

Overview

Name   recX   Type   Regulator
Locus tag   V6D45_RS04625 Genome accession   NZ_CP145722
Coordinates   924513..925304 (+) Length   263 a.a.
NCBI ID   WP_014113104.1    Uniprot ID   G4NRG5
Organism   Bacillus spizizenii strain kcgeb_S11     
Function   inhibit excessive RecA-mediated recombination (predicted from homology)   
Competence regulation

Genomic Context

Location: 919513..930304
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V6D45_RS04595 (V6D45_04600) - 920353..921384 (+) 1032 WP_338444011.1 iron ABC transporter permease -
  V6D45_RS04600 (V6D45_04605) - 921497..922378 (+) 882 WP_268391262.1 PhzF family phenazine biosynthesis isomerase -
  V6D45_RS04605 (V6D45_04610) - 922465..923049 (+) 585 WP_014113101.1 nitroreductase -
  V6D45_RS04610 (V6D45_04615) - 923089..923280 (-) 192 WP_014113102.1 YfhD family protein -
  V6D45_RS04615 (V6D45_04620) - 923347..923457 (-) 111 WP_003223230.1 YfhE family protein -
  V6D45_RS04620 (V6D45_04625) - 923513..924424 (-) 912 WP_268391260.1 TIGR01777 family oxidoreductase -
  V6D45_RS04625 (V6D45_04630) recX 924513..925304 (+) 792 WP_014113104.1 recombination regulator RecX Regulator
  V6D45_RS04630 (V6D45_04635) - 925314..925628 (+) 315 WP_268391256.1 YfhH family protein -
  V6D45_RS04635 (V6D45_04640) - 925771..926964 (+) 1194 WP_338444012.1 MFS transporter -
  V6D45_RS04640 (V6D45_04645) - 926998..927150 (-) 153 WP_003223241.1 small, acid-soluble spore protein K -
  V6D45_RS04645 (V6D45_04650) - 927275..927544 (+) 270 WP_268391253.1 YfhJ family protein -
  V6D45_RS04650 (V6D45_04655) - 927690..928208 (+) 519 WP_338444013.1 SH3 domain-containing protein -
  V6D45_RS04655 (V6D45_04660) - 928294..928626 (+) 333 WP_268393060.1 SdpI family protein -
  V6D45_RS04660 (V6D45_04665) - 928613..929473 (+) 861 WP_338444014.1 alpha/beta hydrolase -

Sequence

Protein


Download         Length: 263 a.a.        Molecular weight: 30878.19 Da        Isoelectric Point: 6.8978

>NTDB_id=939653 V6D45_RS04625 WP_014113104.1 924513..925304(+) (recX) [Bacillus spizizenii strain kcgeb_S11]
MPFITKISTQKKNTERFNIFLDEKYAFSVDADVLVKFELKKGKELDDLDIIEIQYGDEVKKGFNRALEFLSYRMRSTKEV
EDYLKKKETPAPVIAEVIHKLNDYKYLNDQEFAVAYVSTHKKTNGKGPDVLFRELRAKGIGDDTIKEALSSFSFEDQTRE
AVKHVEKLLKKDKKLSTKELKQRAQMQLQRKGFSFDVISAALEQIEYENDEDTEKEALRLHAEKAFRKYRYDGSYESAMK
VKQFLFRKGFSLDLIEQFLQEEE

Nucleotide


Download         Length: 792 bp        

>NTDB_id=939653 V6D45_RS04625 WP_014113104.1 924513..925304(+) (recX) [Bacillus spizizenii strain kcgeb_S11]
ATGCCATTTATTACAAAAATATCAACGCAAAAAAAGAATACGGAACGCTTCAATATCTTTCTCGATGAAAAATACGCCTT
CAGTGTAGACGCGGACGTACTCGTGAAATTTGAGCTTAAAAAGGGAAAAGAACTTGATGACCTTGACATCATTGAGATTC
AATACGGTGATGAAGTGAAAAAAGGCTTCAACCGTGCGCTTGAATTTTTATCCTACCGAATGAGGTCAACGAAAGAGGTA
GAGGACTATTTAAAGAAAAAAGAAACCCCGGCCCCTGTCATAGCGGAAGTCATCCATAAGCTGAACGACTATAAATACTT
AAACGACCAGGAATTTGCCGTAGCCTATGTCAGCACCCACAAAAAAACGAATGGAAAAGGTCCTGACGTTTTGTTCAGAG
AGCTGAGAGCGAAGGGAATCGGCGACGATACAATTAAGGAGGCGCTGAGTTCCTTTTCCTTTGAAGATCAGACGAGAGAA
GCGGTCAAGCATGTTGAAAAGCTTCTCAAAAAGGATAAAAAACTTTCAACAAAAGAACTCAAACAGCGCGCCCAAATGCA
GCTACAGCGCAAGGGCTTCTCATTTGATGTCATCAGCGCGGCGCTGGAGCAGATTGAATATGAAAATGATGAAGATACAG
AGAAAGAAGCGCTGCGCCTTCACGCGGAAAAAGCGTTTAGAAAATACCGCTATGACGGCTCATATGAAAGCGCCATGAAG
GTCAAACAATTTTTATTCCGTAAAGGATTCTCACTCGATTTAATCGAGCAATTTCTGCAGGAAGAGGAGTAG

Domains

Predicted by InterproScan.

RecX family (RecX_HTH2)

(84-204)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NRG5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recX Bacillus subtilis subsp. subtilis str. 168

95.437

100

0.954