Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   V6D45_RS02170 Genome accession   NZ_CP145722
Coordinates   428558..429508 (+) Length   316 a.a.
NCBI ID   WP_061186190.1    Uniprot ID   -
Organism   Bacillus spizizenii strain kcgeb_S11     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 423558..434508
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V6D45_RS02145 (V6D45_02150) yclK 423612..425033 (+) 1422 WP_338443755.1 two-component system sensor histidine kinase YclK -
  V6D45_RS02150 (V6D45_02155) rapC 425195..426343 (+) 1149 WP_338443756.1 response regulator aspartate phosphatase RapC Regulator
  V6D45_RS02155 (V6D45_02160) phrC 426327..426449 (+) 123 WP_003224994.1 phosphatase RapC inhibitor PhrC Regulator
  V6D45_RS02160 (V6D45_02165) - 426549..426656 (-) 108 WP_338443757.1 YjcZ family sporulation protein -
  V6D45_RS02165 (V6D45_02170) - 426809..428173 (-) 1365 WP_088680298.1 aspartate kinase -
  V6D45_RS02170 (V6D45_02175) ceuB 428558..429508 (+) 951 WP_061186190.1 petrobactin ABC transporter permease YclN Machinery gene
  V6D45_RS02175 (V6D45_02180) yclO 429501..430448 (+) 948 WP_268392909.1 petrobactin ABC transporter permease YclO -
  V6D45_RS02180 (V6D45_02185) yclP 430442..431200 (+) 759 WP_014112653.1 petrobactin ABC transporter ATP-binding protein YclP -
  V6D45_RS02185 (V6D45_02190) yclQ 431222..432178 (+) 957 WP_268392908.1 petrobactin ABC transporter substrate-binding protein YclQ -
  V6D45_RS02190 (V6D45_02195) - 432224..433642 (-) 1419 WP_088679959.1 MDR family MFS transporter -

Sequence

Protein


Download         Length: 316 a.a.        Molecular weight: 34916.33 Da        Isoelectric Point: 9.9364

>NTDB_id=939651 V6D45_RS02170 WP_061186190.1 428558..429508(+) (ceuB) [Bacillus spizizenii strain kcgeb_S11]
MKLRYLFILLIILAVTSVFIGVEDLSPLDLFDLSKQEASTLFASRLPRLISIVIAGLSMSICGLIMQQISRNKFVSPTTA
GTMDWARLGILISLLLFTSASPLMKMLVAFVFALAGNFLFMKILERIKFNDTIFIPLVGLMLGNIVSSIATFIAYKYDLI
QNVSSWLQGDFSLVVKGRYELLYLSIPLVIIAYVYADKFTLAGMGESFSVNLGLKYKRVVNIGLIIVSLITSLVILTVGM
LPFLGLIIPNIVSIYRGDNLKNSLPHTALLGAVFVLFCDILGRIIIFPYEISIGLMVGIIGSGIFLFMLLRRKAYA

Nucleotide


Download         Length: 951 bp        

>NTDB_id=939651 V6D45_RS02170 WP_061186190.1 428558..429508(+) (ceuB) [Bacillus spizizenii strain kcgeb_S11]
ATGAAGTTACGTTACTTATTTATTCTACTTATCATATTAGCAGTCACATCTGTATTTATCGGCGTAGAAGATCTGTCGCC
GCTTGATCTCTTCGATTTAAGCAAACAAGAGGCGTCAACGCTGTTTGCAAGCCGTTTGCCGCGATTGATCAGCATTGTCA
TCGCGGGATTAAGCATGAGCATCTGCGGTTTGATTATGCAGCAGATCAGCAGAAACAAATTCGTGTCACCGACGACAGCG
GGCACGATGGATTGGGCTCGGCTCGGCATTTTAATTTCATTGCTGCTGTTCACATCCGCCAGTCCTTTAATGAAAATGCT
GGTCGCGTTCGTCTTTGCCCTTGCAGGAAATTTTCTGTTTATGAAAATCCTTGAAAGAATCAAGTTTAACGACACCATCT
TTATTCCGCTTGTCGGTTTAATGCTCGGGAATATCGTCAGTTCAATCGCGACATTTATCGCATATAAATATGACTTGATC
CAGAATGTGTCATCATGGCTCCAAGGAGACTTCTCTTTAGTCGTAAAAGGAAGATACGAGCTTCTTTATCTGAGTATTCC
GCTCGTCATCATTGCCTATGTGTATGCGGATAAATTCACATTGGCCGGTATGGGAGAAAGCTTTTCTGTCAACCTCGGCC
TGAAGTACAAGCGGGTTGTGAACATCGGGCTCATTATCGTGTCCCTAATCACGTCTCTTGTCATTTTGACTGTCGGTATG
CTTCCGTTTCTCGGTTTAATCATCCCGAATATTGTATCGATTTACAGAGGAGACAATCTGAAGAACAGCCTGCCGCACAC
GGCGCTGTTGGGAGCGGTTTTTGTGCTCTTTTGCGATATACTGGGCAGAATCATTATCTTCCCTTACGAAATCTCGATTG
GCCTGATGGTCGGAATCATCGGCAGCGGCATTTTCCTGTTTATGCTGTTAAGGAGAAAAGCGTATGCGTAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(9-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

52.532

100

0.525