Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   V6D45_RS00245 Genome accession   NZ_CP145722
Coordinates   44508..44792 (-) Length   94 a.a.
NCBI ID   WP_003218316.1    Uniprot ID   G4NTA5
Organism   Bacillus spizizenii strain kcgeb_S11     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 39508..49792
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V6D45_RS00205 (V6D45_00205) darA 39530..39859 (+) 330 WP_003218295.1 cyclic di-AMP receptor DarA -
  V6D45_RS00210 (V6D45_00210) - 39872..40312 (+) 441 WP_003218297.1 YaaR family protein -
  V6D45_RS00215 (V6D45_00215) holB 40324..41313 (+) 990 WP_014112289.1 DNA polymerase III subunit delta' -
  V6D45_RS00220 (V6D45_00220) ricT 41316..42143 (+) 828 WP_014112290.1 competence/sporulation regulator complex protein RicT -
  V6D45_RS00225 (V6D45_00225) yabA 42158..42517 (+) 360 WP_003218308.1 replication initiation-control protein YabA -
  V6D45_RS00230 (V6D45_00230) - 42576..43319 (+) 744 WP_014112291.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  V6D45_RS00235 (V6D45_00235) - 43306..43605 (+) 300 WP_338443613.1 GIY-YIG nuclease family protein -
  V6D45_RS00240 (V6D45_00240) rsmI 43580..44458 (+) 879 WP_014112293.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  V6D45_RS00245 (V6D45_00245) abrB 44508..44792 (-) 285 WP_003218316.1 transition state genes transcriptional regulator AbrB Regulator
  V6D45_RS00250 (V6D45_00250) metG 45293..47287 (+) 1995 WP_268391798.1 methionine--tRNA ligase -
  V6D45_RS00255 (V6D45_00255) - 47366..48133 (+) 768 WP_087987608.1 TatD family hydrolase -
  V6D45_RS00260 (V6D45_00260) - 48379..49602 (+) 1224 WP_250621492.1 ubiquitin-like domain-containing protein -

Sequence

Protein


Download         Length: 94 a.a.        Molecular weight: 10494.25 Da        Isoelectric Point: 6.3482

>NTDB_id=939642 V6D45_RS00245 WP_003218316.1 44508..44792(-) (abrB) [Bacillus spizizenii strain kcgeb_S11]
MKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDDNLKLAGGKLVLSKEGAE
QIISEIQNQLQNLK

Nucleotide


Download         Length: 285 bp        

>NTDB_id=939642 V6D45_RS00245 WP_003218316.1 44508..44792(-) (abrB) [Bacillus spizizenii strain kcgeb_S11]
ATGAAATCTACTGGTATTGTACGTAAAGTTGATGAATTAGGACGTGTAGTTATTCCTATCGAATTGCGTCGTACTCTTGG
AATCGCAGAAAAAGATGCTCTTGAAATTTATGTTGATGACGAAAAAATCATCCTTAAAAAATATAAACCAAACATGACTT
GCCAAGTAACTGGTGAAGTTTCTGATGATAACCTTAAACTTGCAGGCGGTAAATTGGTTCTTAGTAAAGAAGGCGCTGAG
CAAATCATCAGCGAAATCCAAAACCAGCTTCAAAACCTTAAATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-50)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NTA5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

100

100

1