Detailed information NTG0939403

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: ACE17X_RS03405
• Genome accession: NZ_CP169561
• Coordinates: 768834..769859 (+)
• Length: 341 a.a.
• NCBI ID: WP_015444568.1
• Uniprot ID: Q9S4T1
• Organism: Legionella pneumophila strain lpg1386
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 763834..774859

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACE17X_RS03375 (ACE17X_03375)	-	764268..764585 (+)	318	WP_010947009.1	DUF2845 domain-containing protein	-
ACE17X_RS03380 (ACE17X_03380)	-	764622..764993 (+)	372	WP_010947010.1	protease inhibitor I42 family protein	-
ACE17X_RS03385 (ACE17X_03385)	-	765041..766765 (-)	1725	WP_010947011.1	NAD-dependent malic enzyme	-
ACE17X_RS03390 (ACE17X_03390)	-	766845..767228 (+)	384	WP_010947012.1	hypothetical protein	-
ACE17X_RS03395 (ACE17X_03395)	surE	767231..767986 (+)	756	WP_010947013.1	5'/3'-nucleotidase SurE	-
ACE17X_RS03400 (ACE17X_03400)	-	768005..768748 (+)	744	WP_010947014.1	peptidoglycan DD-metalloendopeptidase family protein	-
ACE17X_RS03405 (ACE17X_03405)	rpoS	768834..769859 (+)	1026	WP_015444568.1	RNA polymerase sigma factor RpoS	Regulator
ACE17X_RS03410 (ACE17X_03410)	hmgA	769962..771212 (-)	1251	WP_010947016.1	homogentisate 1,2-dioxygenase	-
ACE17X_RS03415 (ACE17X_03415)	-	771358..772101 (+)	744	WP_010947017.1	YebC/PmpR family DNA-binding transcriptional regulator	-
ACE17X_RS03420 (ACE17X_03420)	ruvC	772101..772625 (+)	525	WP_010947018.1	crossover junction endodeoxyribonuclease RuvC	-
ACE17X_RS03425 (ACE17X_03425)	ruvA	772622..773221 (+)	600	WP_010947019.1	Holliday junction branch migration protein RuvA	-
ACE17X_RS03430 (ACE17X_03430)	-	773271..773591 (+)	321	WP_010947020.1	hypothetical protein	-

Sequence

Protein

• Length: 341 a.a.
• Molecular weight: 39449.70 Da
• Isoelectric Point: 4.3732

>NTDB_id=939403 ACE17X_RS03405 WP_015444568.1 768834..769859(+) (rpoS) [Legionella pneumophila strain lpg1386]
MQDDEEPIKDKEFKEEEWSEPDDESLLSEEDVEPDIEKMEEELDELPEFTDDETFPSFQRGKNIAKALDATQLYLGEIGF
SPLLTAEEEIHYATLALKGDMEARKKMIESNLRLVVKIARRYLNRGLPLLDLIEEGNLGLMKSVEKFDPKRGFRFSTYAT
WWIRQTIERAIMNQTRTIRLPIHVVKELNVYLRAARQLTQKLDHEPSPEEIAEMVDKPLEDVQKLLGLNDKVASVDTPIG
FDETKSLLDTIADENSLNPAELLTNENLRQHIESLLDKLTENQQQVIARRFGLRGFEKATLEDVGKEIDLTRERVRQIQV
EALKTLRTLLERVGLTQEDLF

Nucleotide

• Length: 1026 bp

>NTDB_id=939403 ACE17X_RS03405 WP_015444568.1 768834..769859(+) (rpoS) [Legionella pneumophila strain lpg1386]
ATGCAAGATGATGAAGAGCCAATTAAGGACAAGGAATTTAAAGAAGAGGAATGGTCTGAGCCAGATGATGAATCTCTGTT
GTCAGAAGAAGATGTTGAACCTGATATCGAAAAAATGGAAGAAGAGCTTGATGAACTTCCAGAGTTTACTGATGATGAAA
CTTTTCCTTCATTCCAGCGCGGGAAAAATATTGCCAAGGCTTTAGATGCGACTCAACTTTACTTGGGTGAAATTGGTTTT
TCTCCTTTGTTAACGGCTGAAGAAGAAATCCATTATGCGACTCTTGCTTTAAAAGGTGATATGGAAGCACGCAAGAAAAT
GATTGAGTCGAATTTGCGCCTGGTGGTTAAAATAGCCAGACGTTATCTTAATAGAGGATTGCCTCTTCTTGATCTAATCG
AAGAGGGTAACCTGGGTTTAATGAAGTCTGTTGAGAAATTTGACCCCAAGCGAGGATTCCGTTTTTCAACTTATGCGACC
TGGTGGATTAGGCAAACTATTGAGCGCGCAATTATGAATCAAACGAGAACTATCCGTTTGCCTATTCATGTCGTGAAAGA
ACTTAATGTTTATCTCAGAGCGGCAAGGCAATTGACGCAAAAACTGGATCATGAACCATCACCTGAAGAAATAGCAGAAA
TGGTGGATAAGCCTTTGGAGGATGTCCAAAAATTATTGGGATTGAATGATAAAGTCGCTTCAGTTGATACTCCAATTGGA
TTTGATGAAACCAAATCTTTATTAGATACAATTGCTGATGAAAACAGTTTAAATCCTGCAGAGCTGCTAACCAATGAGAA
TTTAAGGCAGCATATAGAATCTCTTCTGGATAAATTAACTGAGAATCAACAGCAGGTTATCGCAAGACGTTTTGGGTTAA
GAGGTTTTGAAAAAGCGACACTGGAAGACGTTGGTAAGGAAATTGATTTGACCCGAGAACGCGTTCGCCAAATTCAAGTT
GAAGCGTTGAAGACACTTAGAACTTTGTTAGAGCGGGTTGGACTAACACAAGAGGATTTGTTTTGA

Domains

Predicted by InterProScan.

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (69-101)

• Sigma-70 region 2 (Sigma70_r2) (107-176)

• Sigma-70 region 3 (Sigma70_r3) (187-261)

• Sigma-70, region 4 (Sigma70_r4) (275-327)

3D structure

• AlphaFold DB: Q9S4T1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	67.509	81.232	0.548