Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   R8634_RS00960 Genome accession   NZ_AP028381
Coordinates   187892..189397 (-) Length   501 a.a.
NCBI ID   WP_002859384.1    Uniprot ID   -
Organism   Campylobacter jejuni strain BCH-11000     
Function   interact with DprA (predicted from homology)   
Homologous recombination

Genomic Context

Location: 182892..194397
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R8634_RS00930 (B11000_01840) - 183094..184278 (-) 1185 WP_283795391.1 metallophosphoesterase -
  R8634_RS00935 (B11000_01850) - 184288..184497 (-) 210 WP_002851709.1 alkylphosphonate utilization protein -
  R8634_RS00940 (B11000_01860) - 184490..185209 (-) 720 WP_002851673.1 TerC family protein -
  R8634_RS00945 (B11000_01870) purN 185281..185847 (-) 567 WP_002860641.1 phosphoribosylglycinamide formyltransferase -
  R8634_RS00950 (B11000_01880) - 185838..187208 (-) 1371 WP_317656308.1 NAD(P)H-hydrate dehydratase -
  R8634_RS00955 (B11000_01890) - 187192..187890 (-) 699 WP_002826913.1 NYN domain-containing protein -
  R8634_RS00960 (B11000_01900) comM 187892..189397 (-) 1506 WP_002859384.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  R8634_RS00965 (B11000_01910) def 189394..189921 (-) 528 WP_002851936.1 peptide deformylase -
  R8634_RS00970 (B11000_01920) clpP 189957..190541 (-) 585 WP_002806309.1 ATP-dependent Clp endopeptidase proteolytic subunit ClpP -
  R8634_RS00975 (B11000_01930) tig 190541..191875 (-) 1335 WP_002851938.1 trigger factor -
  R8634_RS00980 (B11000_01940) folE 192019..192591 (+) 573 WP_002851990.1 GTP cyclohydrolase I FolE -
  R8634_RS00985 (B11000_01950) fliI 192591..193976 (+) 1386 WP_002900770.1 flagellar protein export ATPase FliI -

Sequence

Protein


Download         Length: 501 a.a.        Molecular weight: 56443.50 Da        Isoelectric Point: 8.7353

>NTDB_id=93939 R8634_RS00960 WP_002859384.1 187892..189397(-) (comM) [Campylobacter jejuni strain BCH-11000]
MKKLKCISFHEGLDIIEVESTFTRGLPNLSIVGLASTAIKESVERIKATLLSCDFAFPAKKITINLSPSGIPKKGSHFDL
AIALLILLQNEELDDFFVVGELGLDGSIKSTNELFSLLLFLSAKIKKAKIVVPKSIAQKASMIPNLEVYGLENLNEAIEF
FKEKNYENFRFSHNHPLFANPLQIENEIFLQNMDFKLDFKDIKGQEKAKRACMIAALGMHNILFEGSPGSGKSMCAKRLV
YIMPPQSLSEILMQNAYMSLDSKDCEFTKIRAFRHPHHTSTRASIFGGGTKNARIGEVALANGGVLFFDEFPHFNKQIIE
SLREPLEDYKIHISRVNSKITYETKFSFIAAQNPCPCGNLFSKNLSCVCSENEIKKYKNHISAPIMDRIDLYVAMDEISK
DDKVSISSKEMSEKILQAFIFGKKRGQKEFNGKLKDEDLSRFCVLEKDAKDTLDLAISRYNLSLRSLNKILKVSRSIADL
EQSLNINKTHILEALSFRARN

Nucleotide


Download         Length: 1506 bp        

>NTDB_id=93939 R8634_RS00960 WP_002859384.1 187892..189397(-) (comM) [Campylobacter jejuni strain BCH-11000]
ATGAAAAAACTAAAGTGCATAAGCTTTCATGAAGGCTTAGACATTATAGAGGTAGAATCCACTTTTACAAGAGGTTTGCC
AAATTTAAGCATAGTAGGGCTTGCAAGTACAGCGATTAAGGAAAGTGTCGAACGCATCAAAGCCACACTTTTAAGTTGTG
ATTTTGCTTTTCCTGCTAAAAAAATCACTATCAATCTTAGTCCTTCAGGCATCCCAAAAAAGGGATCGCATTTTGATTTG
GCTATCGCTTTATTAATCCTTTTGCAAAATGAAGAATTAGATGACTTTTTTGTAGTAGGAGAATTAGGACTTGATGGAAG
TATTAAAAGCACAAATGAGCTTTTTTCTTTGCTTTTGTTTCTCTCTGCTAAAATTAAAAAAGCTAAGATCGTTGTTCCAA
AAAGTATAGCACAAAAAGCTTCCATGATACCAAATTTAGAGGTTTATGGACTTGAAAATTTAAATGAAGCAATAGAGTTT
TTTAAAGAAAAAAATTATGAAAATTTTCGCTTTTCTCACAATCATCCTTTATTTGCAAACCCTTTACAAATAGAAAATGA
AATTTTTTTACAAAATATGGATTTTAAACTTGATTTTAAAGATATCAAAGGGCAGGAAAAAGCCAAAAGAGCTTGTATGA
TAGCTGCTTTAGGTATGCATAATATCTTATTTGAAGGAAGTCCAGGAAGTGGTAAAAGCATGTGTGCTAAACGCCTTGTT
TATATCATGCCCCCTCAAAGTTTAAGTGAAATTTTAATGCAAAATGCTTATATGTCTTTAGATTCAAAAGATTGTGAATT
TACTAAAATTCGTGCTTTTCGTCATCCTCATCATACTTCTACAAGAGCAAGTATTTTTGGCGGAGGAACAAAAAATGCCA
GAATTGGAGAAGTAGCACTTGCAAATGGTGGAGTATTGTTTTTTGATGAATTTCCACATTTTAACAAGCAAATCATAGAG
AGTTTAAGAGAACCTTTGGAGGATTATAAAATTCATATTTCAAGAGTAAATTCTAAAATCACTTATGAAACAAAATTTAG
CTTTATAGCTGCCCAAAATCCTTGTCCTTGTGGAAATTTATTCTCCAAAAATCTTTCTTGCGTTTGTAGCGAAAATGAGA
TTAAAAAGTATAAAAATCACATTTCAGCTCCTATTATGGATAGGATTGATCTTTATGTAGCTATGGATGAGATCAGCAAG
GATGATAAAGTAAGTATAAGTTCTAAAGAAATGAGTGAAAAAATTTTACAAGCTTTTATTTTTGGTAAAAAACGGGGGCA
AAAAGAATTTAATGGGAAATTAAAAGATGAAGATTTGAGTCGTTTTTGTGTATTGGAAAAAGATGCTAAAGATACGCTAG
ATTTAGCAATTTCACGTTATAATCTTTCTTTGCGATCACTCAATAAAATTTTAAAAGTTTCAAGAAGTATAGCGGATTTA
GAACAAAGTCTTAATATTAACAAAACCCATATTTTAGAAGCTTTAAGCTTTAGAGCAAGGAATTAA

Domains

Predicted by InterProScan.

Subunit ChlI of Mg-chelatase (ChlI)

(18-134)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(198-400)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(407-498)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Helicobacter pylori 26695

47.495

99.601

0.473

Multiple sequence alignment