Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   ACEXP4_RS24575 Genome accession   NZ_CP169522
Coordinates   5045598..5045963 (-) Length   121 a.a.
NCBI ID   WP_003084587.1    Uniprot ID   A0A0H2ZKW2
Organism   Pseudomonas aeruginosa strain CIMT2     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5040598..5050963
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACEXP4_RS24560 (ACEXP4_24560) pilK 5041942..5042817 (-) 876 WP_073666654.1 type 4 fimbrial methyltransferase PilK -
  ACEXP4_RS24565 (ACEXP4_24565) pilJ 5042878..5044926 (-) 2049 WP_003084592.1 chemotaxis chemoreceptor PilJ -
  ACEXP4_RS24570 (ACEXP4_24570) - 5045011..5045547 (-) 537 WP_003084590.1 chemotaxis protein CheW -
  ACEXP4_RS24575 (ACEXP4_24575) pilH 5045598..5045963 (-) 366 WP_003084587.1 twitching motility response regulator PilH Machinery gene
  ACEXP4_RS24580 (ACEXP4_24580) pilG 5046010..5046417 (-) 408 WP_003084583.1 twitching motility response regulator PilG Regulator
  ACEXP4_RS24585 (ACEXP4_24585) gshB 5046672..5047625 (+) 954 WP_003100943.1 glutathione synthase -
  ACEXP4_RS24590 (ACEXP4_24590) - 5047772..5048665 (+) 894 WP_003084580.1 TonB family protein -
  ACEXP4_RS24595 (ACEXP4_24595) - 5048714..5049283 (+) 570 WP_003100947.1 YqgE/AlgH family protein -
  ACEXP4_RS24600 (ACEXP4_24600) ruvX 5049283..5049717 (+) 435 WP_003084575.1 Holliday junction resolvase RuvX -
  ACEXP4_RS24605 (ACEXP4_24605) pyrR 5049829..5050341 (+) 513 WP_003084574.1 bifunctional pyr operon transcriptional regulator/uracil phosphoribosyltransferase PyrR -

Sequence

Protein


Download         Length: 121 a.a.        Molecular weight: 13273.30 Da        Isoelectric Point: 5.1961

>NTDB_id=939183 ACEXP4_RS24575 WP_003084587.1 5045598..5045963(-) (pilH) [Pseudomonas aeruginosa strain CIMT2]
MARILIVDDSPTEMYKLTAMLEKHGHQVLKAENGGDGVALARQEKPDVVLMDIVMPGLNGFQATRQLTKDAETSAIPVII
VTTKDQETDKVWGKRQGARDYLTKPVDEETLLKTINAVLAG

Nucleotide


Download         Length: 366 bp        

>NTDB_id=939183 ACEXP4_RS24575 WP_003084587.1 5045598..5045963(-) (pilH) [Pseudomonas aeruginosa strain CIMT2]
ATGGCTCGTATTTTGATTGTTGATGACTCTCCGACCGAGATGTACAAGCTGACCGCCATGCTGGAAAAGCATGGTCACCA
GGTACTCAAGGCCGAGAACGGCGGCGACGGCGTCGCCCTGGCCCGCCAGGAAAAGCCCGACGTGGTCCTGATGGACATCG
TCATGCCCGGCCTCAACGGCTTCCAGGCGACCCGTCAATTGACCAAGGACGCCGAGACCAGCGCCATCCCGGTGATCATC
GTCACCACCAAGGACCAGGAGACCGACAAGGTCTGGGGCAAGCGCCAGGGCGCTCGCGACTACCTGACCAAGCCGGTGGA
CGAAGAGACCCTGCTGAAAACCATCAATGCGGTGCTGGCGGGCTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZKW2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Synechocystis sp. PCC 6803

36.975

98.347

0.364