Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA/comE1   Type   Machinery gene
Locus tag   ACEXP4_RS16280 Genome accession   NZ_CP169522
Coordinates   3370417..3370746 (-) Length   109 a.a.
NCBI ID   WP_003091430.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain CIMT2     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3365417..3375746
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACEXP4_RS16265 (ACEXP4_16265) uvrB 3366804..3368816 (-) 2013 WP_058017413.1 excinuclease ABC subunit UvrB Machinery gene
  ACEXP4_RS16270 (ACEXP4_16270) - 3369004..3370200 (+) 1197 WP_033942683.1 amino acid aminotransferase -
  ACEXP4_RS16280 (ACEXP4_16280) comEA/comE1 3370417..3370746 (-) 330 WP_003091430.1 ComEA family DNA-binding protein Machinery gene
  ACEXP4_RS16285 (ACEXP4_16285) - 3370937..3372934 (-) 1998 WP_057388198.1 nucleoside-diphosphate sugar epimerase/dehydratase -
  ACEXP4_RS16290 (ACEXP4_16290) - 3373119..3374156 (-) 1038 WP_058017424.1 glycosyltransferase family 4 protein -
  ACEXP4_RS16295 (ACEXP4_16295) - 3374156..3375118 (-) 963 WP_058017412.1 SDR family oxidoreductase -

Sequence

Protein


Download         Length: 109 a.a.        Molecular weight: 11367.31 Da        Isoelectric Point: 8.0459

>NTDB_id=939166 ACEXP4_RS16280 WP_003091430.1 3370417..3370746(-) (comEA/comE1) [Pseudomonas aeruginosa strain CIMT2]
MHLIKSALLLILFACLPFSASAAPVAVAKNPLAATTPATTVSPGEQVNINTVDEAALIRGLNGVGEAKARAILEYRAAHG
PFVSVDQLLEVKGVGPALLEKNRSRIVIE

Nucleotide


Download         Length: 330 bp        

>NTDB_id=939166 ACEXP4_RS16280 WP_003091430.1 3370417..3370746(-) (comEA/comE1) [Pseudomonas aeruginosa strain CIMT2]
ATGCACCTAATCAAATCCGCTCTGCTTCTCATCCTGTTCGCCTGTCTTCCGTTTTCGGCTTCCGCCGCACCGGTCGCCGT
CGCCAAGAATCCGCTGGCCGCAACGACACCTGCGACGACCGTGTCGCCGGGGGAACAGGTCAATATCAACACGGTCGACG
AGGCCGCCCTGATACGGGGGCTCAACGGTGTCGGCGAGGCCAAGGCCAGGGCGATCCTCGAGTATCGTGCGGCCCATGGT
CCGTTCGTCTCGGTGGATCAACTGCTGGAAGTGAAAGGGGTAGGCCCGGCGTTGCTGGAGAAGAACCGGTCGCGGATCGT
CATCGAGTGA

Domains

Predicted by InterProScan.

Helix-hairpin-helix motif (HHH_3)

(44-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA/comE1 Glaesserella parasuis strain SC1401

40.385

95.413

0.385