Detailed information    

insolico Bioinformatically predicted

Overview

Name   fimT   Type   Machinery gene
Locus tag   ACEYZN_RS02980 Genome accession   NZ_CP169375
Coordinates   618699..619214 (-) Length   171 a.a.
NCBI ID   WP_000477151.1    Uniprot ID   V5VA61
Organism   Acinetobacter baumannii strain H3     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 613699..624214
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACEYZN_RS02955 (ACEYZN_02955) - 614244..615887 (+) 1644 WP_000281761.1 nitrite/sulfite reductase -
  ACEYZN_RS02960 (ACEYZN_02960) - 615880..616365 (+) 486 WP_000935247.1 DUF934 domain-containing protein -
  ACEYZN_RS02965 (ACEYZN_02965) - 616448..616801 (+) 354 WP_033851874.1 multidrug efflux SMR transporter -
  ACEYZN_RS02970 (ACEYZN_02970) - 616844..617287 (-) 444 WP_001176580.1 VOC family protein -
  ACEYZN_RS02975 (ACEYZN_02975) - 617415..618590 (-) 1176 WP_086231158.1 thiolase family protein -
  ACEYZN_RS02980 (ACEYZN_02980) fimT 618699..619214 (-) 516 WP_000477151.1 GspH/FimT family pseudopilin Machinery gene
  ACEYZN_RS02985 (ACEYZN_02985) omp38 619596..620666 (+) 1071 WP_000777877.1 outer membrane protein Omp38 -
  ACEYZN_RS02990 (ACEYZN_02990) - 620790..620948 (-) 159 WP_000692859.1 hypothetical protein -
  ACEYZN_RS02995 (ACEYZN_02995) - 620952..622157 (-) 1206 WP_000512701.1 RtcB family protein -
  ACEYZN_RS03000 (ACEYZN_03000) - 622434..623894 (-) 1461 WP_057094511.1 amino acid permease -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19606.86 Da        Isoelectric Point: 8.8196

>NTDB_id=939074 ACEYZN_RS02980 WP_000477151.1 618699..619214(-) (fimT) [Acinetobacter baumannii strain H3]
MFKSPGFTIVELTITLVILVIMSVIAIPLYHQFMASVELKNTPRILTIHIQKAKYDAIIRHKNVVLCPSSDQLVCNTNWD
NRVISFVDNNRNLQHDLNEELLTSIDLNHHYGSMKLQRFGKKQNSIIFQGSSGLPIESNGSFIYCSYDQLKNFKLILSKM
GHVRLEELKNC

Nucleotide


Download         Length: 516 bp        

>NTDB_id=939074 ACEYZN_RS02980 WP_000477151.1 618699..619214(-) (fimT) [Acinetobacter baumannii strain H3]
ATGTTTAAATCTCCTGGTTTTACTATAGTTGAGCTCACTATAACACTCGTAATTCTTGTGATTATGTCAGTTATAGCCAT
TCCTTTATACCATCAATTTATGGCATCTGTAGAATTAAAAAATACGCCGCGCATACTCACAATTCATATACAAAAAGCCA
AATATGACGCAATTATTAGGCATAAGAATGTTGTTCTTTGTCCAAGTTCTGATCAATTGGTCTGCAATACGAATTGGGAT
AACCGCGTAATCAGCTTTGTAGATAATAACCGTAATCTACAACATGATTTAAATGAAGAATTATTGACCTCTATAGATCT
TAACCATCACTACGGTTCTATGAAATTACAACGTTTTGGAAAAAAACAAAATAGTATTATTTTTCAAGGTAGTTCTGGAC
TACCCATCGAGTCGAATGGCAGTTTTATCTATTGTTCTTATGACCAGCTTAAAAACTTTAAATTAATTCTTAGCAAAATG
GGTCATGTACGCTTAGAAGAGCTTAAAAATTGTTAG

Domains

Predicted by InterProScan.

Type II transport protein GspH (GspH)

(50-149)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB V5VA61

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  fimT Acinetobacter baylyi ADP1

43.976

97.076

0.427