Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   ACEY2B_RS12065 Genome accession   NZ_CP169315
Coordinates   2439707..2440462 (-) Length   251 a.a.
NCBI ID   WP_029344660.1    Uniprot ID   -
Organism   Lactococcus lactis strain IFLLLBEK1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2434707..2445462
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACEY2B_RS12045 (ACEY2B_12045) - 2435636..2437198 (-) 1563 WP_374788091.1 ATP-binding cassette domain-containing protein -
  ACEY2B_RS12050 (ACEY2B_12050) - 2437202..2437786 (-) 585 WP_374788092.1 SPASM domain-containing protein -
  ACEY2B_RS12055 (ACEY2B_12055) - 2437845..2438483 (-) 639 WP_374788093.1 radical SAM protein -
  ACEY2B_RS12060 (ACEY2B_12060) - 2438712..2439593 (-) 882 WP_058219502.1 Rgg/GadR/MutR family transcriptional regulator -
  ACEY2B_RS12065 (ACEY2B_12065) recO 2439707..2440462 (-) 756 WP_029344660.1 DNA repair protein RecO Machinery gene
  ACEY2B_RS12070 (ACEY2B_12070) - 2440561..2441736 (-) 1176 WP_374788094.1 pyridoxal phosphate-dependent aminotransferase -
  ACEY2B_RS12080 (ACEY2B_12080) - 2442202..2442723 (-) 522 WP_003132215.1 GNAT family N-acetyltransferase -
  ACEY2B_RS12085 (ACEY2B_12085) - 2442933..2444555 (+) 1623 WP_374788095.1 SulP family inorganic anion transporter -
  ACEY2B_RS12090 (ACEY2B_12090) - 2444636..2444878 (-) 243 WP_015425612.1 TM2 domain-containing protein -
  ACEY2B_RS12095 (ACEY2B_12095) - 2444939..2445238 (-) 300 Protein_2345 GNAT family N-acetyltransferase -
  ACEY2B_RS12100 (ACEY2B_12100) - 2445290..2445403 (-) 114 WP_225513349.1 acetyltransferase -

Sequence

Protein


Download         Length: 251 a.a.        Molecular weight: 28698.88 Da        Isoelectric Point: 6.1527

>NTDB_id=939052 ACEY2B_RS12065 WP_029344660.1 2439707..2440462(-) (recO) [Lactococcus lactis strain IFLLLBEK1]
MRDAETHGLVLYSRNYKEKDKLVKIFTESFGKRMFFVKNFGKSPYASSLQAFTDGKLTATINDGGFSFIEDVSEVVVYKN
ISSDIFINAHASYIISLADAAISDNQYDPGLYGFLKRSLELLDQGFDMEVVTNIFELQVLHRFGVSLNFSECAFCHKTVG
PFDFSYKFSGCLCPQHFDEDLRRSHLDPNVIYLVNLFQEISLDELKKISIKADMKLKIRQFIDGLYDEYVGIHLKSKKFL
DGMSGWADIMK

Nucleotide


Download         Length: 756 bp        

>NTDB_id=939052 ACEY2B_RS12065 WP_029344660.1 2439707..2440462(-) (recO) [Lactococcus lactis strain IFLLLBEK1]
ATGCGTGATGCCGAAACTCATGGTCTAGTGCTTTACAGTCGTAATTACAAAGAAAAAGATAAATTGGTCAAGATTTTTAC
AGAGTCTTTTGGTAAACGGATGTTTTTTGTCAAAAATTTTGGAAAATCCCCTTATGCTAGTTCCTTACAAGCTTTTACTG
ATGGAAAATTGACGGCAACGATTAATGACGGGGGATTTTCTTTTATCGAGGATGTCAGTGAAGTGGTCGTTTATAAAAAT
ATTAGTTCAGATATTTTCATCAATGCTCATGCTTCTTATATCATAAGTTTAGCTGATGCGGCCATTTCTGATAATCAATA
CGACCCAGGGCTTTATGGATTTCTAAAGCGAAGTTTAGAGCTTTTAGATCAAGGATTTGATATGGAAGTCGTGACTAACA
TTTTTGAATTACAAGTTCTTCATCGTTTTGGGGTTTCATTGAACTTCTCAGAATGTGCATTTTGTCATAAAACCGTTGGC
CCCTTTGATTTTTCTTATAAATTTAGTGGCTGCCTTTGTCCCCAACATTTTGATGAAGATTTACGACGGAGTCATCTTGA
CCCAAATGTGATTTATTTGGTCAATCTTTTTCAAGAAATATCTTTAGATGAACTCAAAAAAATCTCGATAAAAGCAGATA
TGAAACTAAAAATTCGTCAATTTATTGATGGGCTTTATGATGAATATGTCGGAATTCATCTCAAATCCAAAAAATTCTTG
GACGGAATGTCTGGGTGGGCAGATATTATGAAATAA

Domains

Predicted by InterProScan.

Recombination protein O N terminal (RecO_N)

(1-72)

Recombination protein O C terminal (RecO_C)

(83-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Streptococcus pneumoniae R6

53.659

98.008

0.526