Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   V6S17_RS03925 Genome accession   NZ_CP145608
Coordinates   769932..771614 (+) Length   560 a.a.
NCBI ID   WP_029091150.1    Uniprot ID   -
Organism   Brochothrix thermosphacta DSM 20171 = FSL F6-1036 strain DSM 20171     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 764932..776614
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V6S17_RS03900 (V6S17_03900) xseB 765438..765674 (+) 237 WP_029091145.1 exodeoxyribonuclease VII small subunit -
  V6S17_RS03905 (V6S17_03905) - 765671..766552 (+) 882 WP_029091146.1 farnesyl diphosphate synthase -
  V6S17_RS03910 (V6S17_03910) dxs 766578..768365 (+) 1788 WP_051457368.1 1-deoxy-D-xylulose-5-phosphate synthase -
  V6S17_RS03915 (V6S17_03915) - 768379..769203 (+) 825 WP_029091148.1 TlyA family RNA methyltransferase -
  V6S17_RS03920 (V6S17_03920) argR 769452..769901 (+) 450 WP_029091149.1 transcriptional regulator ArgR -
  V6S17_RS03925 (V6S17_03925) recN 769932..771614 (+) 1683 WP_029091150.1 DNA repair protein RecN Machinery gene
  V6S17_RS03930 (V6S17_03930) buk 771759..772859 (+) 1101 WP_029091151.1 butyrate kinase -
  V6S17_RS03935 (V6S17_03935) gndA 773288..774703 (+) 1416 WP_029091152.1 NADP-dependent phosphogluconate dehydrogenase -

Sequence

Protein


Download         Length: 560 a.a.        Molecular weight: 63423.86 Da        Isoelectric Point: 4.9668

>NTDB_id=939038 V6S17_RS03925 WP_029091150.1 769932..771614(+) (recN) [Brochothrix thermosphacta DSM 20171 = FSL F6-1036 strain DSM 20171]
MLQELSIRHLAIIEEISLSFKKGLTVLTGETGAGKSIIIDALGLIVGGRASNDLIRHGADKADLEALFTIEKNKRAHSVL
EELGIEVEDEMVVLHRTLMRSGKNVCRINGKLVTTTNLRDVGETLLDIHSQHESQDLMNDAHHIYLIDQFAAEKIAEPLK
AYQLFYAELKNKRQEFNRFNKNEQELAQRIDMLHFQNKELEAANLVLGEEEELAAERSLLANYEKINHNVEASYDLLQGE
QSTLDQVAKVMNHLTAIQEVDGRYKEWFETVQTAYFSLSDVASDLNQELSTLEYNPEQLNNIETRMDIINQLKRKYGDSV
DEMMAYHEKISQEIEHLEHSESHSEQLQKEIEIVNEKLQLLANDLTVIRQQAAEELTVSIHDEFKELYMDKAIFKVNFET
QELGERGNNRIQFYTSTNPGEPLKPLHKIASGGELSRMMLAMKTIFSKHQGITSIIFDEVDTGVSGRVAQAIGQKIYSVS
VGSQVLCISHLPQVAAMADNHYHIEKTVSASRTRTTVSELSLDKRVAEIAMMMSGVEMTTSTEMHARELIQQSEKMKNIG

Nucleotide


Download         Length: 1683 bp        

>NTDB_id=939038 V6S17_RS03925 WP_029091150.1 769932..771614(+) (recN) [Brochothrix thermosphacta DSM 20171 = FSL F6-1036 strain DSM 20171]
ATGCTCCAAGAATTATCGATACGTCATCTTGCAATCATCGAGGAAATTTCATTATCTTTTAAAAAGGGTCTTACAGTTTT
GACTGGTGAAACAGGTGCCGGAAAATCAATTATTATTGATGCATTGGGACTTATTGTTGGTGGTCGAGCATCGAACGATT
TAATCCGACATGGTGCAGATAAGGCCGATTTAGAAGCATTGTTTACTATTGAAAAAAATAAGCGTGCCCATTCTGTTCTA
GAAGAATTAGGGATTGAAGTCGAGGATGAGATGGTCGTTTTACATCGAACATTGATGAGAAGTGGTAAAAATGTCTGTCG
AATCAATGGGAAATTAGTGACAACAACTAATTTGCGTGATGTAGGCGAGACGTTATTAGATATTCATTCCCAACATGAGA
GTCAAGATTTAATGAATGATGCTCATCATATCTATTTAATAGATCAGTTTGCAGCAGAAAAAATAGCTGAACCTTTAAAA
GCATACCAATTATTCTATGCCGAGTTGAAAAATAAACGTCAAGAATTTAATCGTTTTAATAAAAACGAACAAGAATTGGC
ACAACGAATTGATATGTTACACTTTCAAAATAAAGAATTAGAAGCAGCTAATCTCGTATTAGGTGAAGAAGAAGAGTTGG
CAGCAGAACGTTCGTTATTGGCAAATTATGAAAAAATAAATCATAATGTTGAAGCAAGTTATGACTTATTACAAGGTGAG
CAGTCAACGTTAGATCAAGTAGCAAAAGTGATGAATCATTTAACTGCAATTCAAGAAGTTGATGGACGTTACAAAGAATG
GTTTGAAACAGTGCAAACTGCTTATTTCAGCTTATCCGATGTTGCGAGCGATTTAAATCAAGAACTGTCAACATTGGAAT
ATAATCCTGAGCAATTAAATAATATAGAAACACGGATGGATATCATCAACCAATTAAAACGTAAATATGGTGATTCAGTT
GATGAAATGATGGCTTACCATGAAAAAATAAGCCAAGAAATTGAACACTTAGAACATAGTGAGTCACACTCAGAACAATT
GCAAAAAGAAATCGAAATCGTGAATGAGAAGTTACAACTCCTAGCGAATGATTTAACCGTTATACGCCAGCAGGCAGCTG
AAGAGTTAACTGTATCAATTCATGATGAATTTAAAGAACTTTACATGGATAAAGCAATTTTTAAAGTGAATTTTGAAACA
CAAGAGTTAGGTGAGCGCGGTAATAATCGTATTCAATTCTATACATCTACTAACCCTGGTGAACCTTTGAAACCTTTGCA
TAAAATTGCATCAGGTGGGGAATTGTCACGGATGATGTTAGCAATGAAAACCATCTTTTCTAAGCATCAAGGTATTACAA
GCATCATTTTTGATGAAGTTGATACCGGTGTTAGCGGTCGAGTGGCACAAGCGATTGGTCAAAAGATATACTCTGTGTCA
GTAGGATCACAAGTGTTGTGTATTTCACATTTACCACAGGTTGCAGCAATGGCAGACAACCATTATCATATTGAAAAAAC
TGTCTCTGCATCACGTACACGTACGACGGTTTCTGAACTGTCGTTAGATAAACGTGTTGCTGAAATAGCGATGATGATGA
GTGGTGTTGAAATGACAACTTCAACTGAGATGCATGCACGTGAACTGATCCAACAATCAGAAAAAATGAAGAATATTGGC
TAA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-507)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

47.569

100

0.489