Detailed information    

insolico Bioinformatically predicted

Overview

Name   recC   Type   Machinery gene
Locus tag   ORY85_RS10525 Genome accession   NZ_CP145606
Coordinates   2192327..2195554 (-) Length   1075 a.a.
NCBI ID   WP_274570768.1    Uniprot ID   -
Organism   Neisseria leonii strain 3986     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2187327..2200554
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ORY85_RS10515 (ORY85_10515) uvrA 2188508..2191345 (-) 2838 WP_274570770.1 excinuclease ABC subunit UvrA -
  ORY85_RS10520 (ORY85_10520) - 2191465..2191821 (-) 357 WP_274570769.1 YkvA family protein -
  ORY85_RS10525 (ORY85_10525) recC 2192327..2195554 (-) 3228 WP_274570768.1 exodeoxyribonuclease V subunit gamma Machinery gene
  ORY85_RS10530 (ORY85_10530) trmB 2195933..2196637 (+) 705 WP_274570767.1 tRNA (guanosine(46)-N7)-methyltransferase TrmB -
  ORY85_RS10535 (ORY85_10535) trmA 2196640..2197737 (+) 1098 WP_274570766.1 tRNA (uridine(54)-C5)-methyltransferase TrmA -
  ORY85_RS10540 (ORY85_10540) - 2197749..2199095 (+) 1347 WP_405030331.1 aldehyde dehydrogenase family protein -
  ORY85_RS10545 (ORY85_10545) - 2199070..2199810 (+) 741 WP_274570765.1 toxin-antitoxin system YwqK family antitoxin -

Sequence

Protein


Download         Length: 1075 a.a.        Molecular weight: 119962.58 Da        Isoelectric Point: 6.4903

>NTDB_id=939019 ORY85_RS10525 WP_274570768.1 2192327..2195554(-) (recC) [Neisseria leonii strain 3986]
MLYLYQSNRLEDLAGMLHAVHRAQPPAEPLAAEDILVQSQGMRRYLTRFLAGRDGIAANLNFLLPAKFHWHLMRQALPDL
PALSPFAPGVMRWRLLKRFSDGLDGSGFSAARAALSGYLAGGSLAAYQLAGQLADIFDQYLVYRPEWLDAWQQNRTLNLG
SDEIWQAELWRYLNEDSGSNLHRVGMWRALSAALSEPERTAVKLPPRLSVFGISVMAPVHLQLLQAVSQHTDVHIFALNP
SEHYWGNIISPAQILQNGVSDGLEAAGHPLLASLGKQGRDFFDALSQAEPQLALAPYPDAPASDSLLHRLQYDIQTLQLP
EPRHTPDNSIRIVSAHSPLRELQILKDHLLDLLEQHPDWQPHDIAVLTPDIEPYHPFIEAVFGQTAGGRALPYSVSDIKI
RRRRPLFDALAQALAVLESRFEIDTVLQLLGHEAVLSRFGLTRQDLPLLHEAAAELNIRWGWDAQMRGGNGLYTWQQGLD
SMTAGWLLPENGGLWQHTAAWHTGTGHLPVLSRFHQFARTLSRHYHLWQTPADTVGWIDRLRTLKNELFQPAESDQAAEI
QLEEALADWQAEASLAGFSGTLPPETVLRHIGRFLDSESEAGFLRSGITICGMVPMRSLPFKAVCLLGLNDKTFPRNTKA
AAFDLIAQHPRAGDRARRDDDRYLFLEALMSAREHLYLSYIGRSIRNNDELAPSPLVSELADTLDSMCGHSSGTWQKQLI
EQHPLQPFSARYFQNGPLISSRSDYAQARQRPSETAPFFTPPENGEDAPSGKPPVIRQADLIEFWQNPPRYWLRHRLDWR
APWHGSDSEAAEPFEPPQADAVADAYTEARRRHLDFATAAEPLHARSQLPEAELGKLWQQQYEAQARRLDGRLLSAAPLP
DTSYRLHIGGMILEGSLDSLTAEGRITTGRESTAHFIARLLQHLILNAVRPQNMAHFAGHHLTLGKETATFTALPDAGTA
ADLLVPWLDYYRQGQIRPLPFVPHTALKAAQAFIKPESKSGKTPEERLNAAAHQSYFGRNSGQTARADYPENATAFARRT
PPPDDPLFARILHDTLIPALTACGGTDIQPSRPSE

Nucleotide


Download         Length: 3228 bp        

>NTDB_id=939019 ORY85_RS10525 WP_274570768.1 2192327..2195554(-) (recC) [Neisseria leonii strain 3986]
ATGCTGTATCTGTACCAGTCCAACCGCCTCGAAGACCTTGCCGGTATGCTGCACGCCGTCCACCGCGCGCAGCCGCCCGC
CGAGCCTTTGGCCGCCGAAGACATTCTGGTGCAGAGTCAGGGAATGCGCCGCTATCTCACCCGTTTTCTGGCCGGACGCG
ACGGCATCGCCGCCAATCTCAATTTCCTCCTGCCCGCCAAATTCCACTGGCATCTGATGCGCCAAGCCCTGCCCGACCTG
CCCGCGCTCAGCCCCTTTGCGCCCGGCGTGATGCGCTGGCGACTGCTGAAACGGTTTTCAGACGGCCTCGACGGCAGCGG
TTTCTCAGCCGCCCGTGCCGCATTGAGCGGCTATCTGGCGGGCGGCAGCCTGGCCGCATATCAGCTGGCCGGACAATTGG
CCGACATTTTCGACCAATATCTGGTTTACCGTCCCGAATGGCTCGATGCGTGGCAGCAGAACCGTACGCTGAATCTGGGC
AGCGACGAAATCTGGCAGGCCGAATTGTGGCGTTATCTGAATGAAGACAGCGGCAGCAATCTGCACCGCGTGGGCATGTG
GCGCGCCCTGTCGGCCGCCTTGTCGGAGCCGGAACGCACTGCCGTGAAACTGCCGCCGCGCCTGTCCGTATTCGGTATTT
CCGTGATGGCACCGGTACACCTGCAACTGCTGCAAGCCGTTTCGCAACACACCGACGTACACATTTTCGCCCTCAATCCG
AGCGAACATTATTGGGGAAACATCATCAGCCCGGCACAAATCCTGCAAAACGGCGTTTCAGACGGCCTCGAAGCCGCCGG
ACACCCGCTTCTGGCTTCCTTGGGCAAACAGGGGCGCGACTTTTTCGACGCACTCAGTCAGGCCGAGCCGCAGCTTGCCC
TTGCCCCCTATCCCGATGCCCCCGCCTCGGACAGCCTGCTGCACCGCCTGCAATACGATATTCAAACCCTGCAACTGCCC
GAACCGCGCCACACGCCCGACAACAGCATCCGCATCGTCTCCGCCCACAGCCCGCTGCGCGAATTGCAGATTCTGAAAGA
CCACCTGCTCGACCTGCTCGAACAACACCCCGACTGGCAGCCGCACGACATCGCCGTCCTCACGCCCGACATCGAACCCT
ACCACCCGTTTATCGAAGCCGTTTTCGGCCAAACCGCCGGCGGCCGCGCCCTGCCGTATTCGGTATCCGACATCAAAATC
CGCCGCCGCCGTCCGCTGTTCGACGCATTGGCACAAGCATTGGCAGTATTGGAAAGCCGTTTTGAAATCGACACCGTGCT
GCAACTGCTCGGCCACGAAGCCGTCCTGTCCCGCTTCGGCCTGACCCGTCAGGATCTGCCGCTGCTGCACGAAGCGGCGG
CCGAACTCAATATCCGCTGGGGCTGGGACGCGCAGATGCGCGGCGGCAACGGCCTCTACACCTGGCAGCAGGGCTTGGAC
AGCATGACCGCAGGCTGGCTGCTGCCCGAAAACGGCGGCCTGTGGCAGCACACCGCCGCCTGGCATACCGGCACCGGCCA
CCTGCCCGTTTTAAGCCGTTTCCACCAATTCGCCCGCACCCTGAGCCGCCATTATCACCTCTGGCAGACTCCGGCCGATA
CCGTCGGCTGGATTGATCGGCTGCGTACCTTGAAAAACGAACTGTTCCAACCGGCCGAAAGCGATCAGGCCGCCGAAATA
CAGCTGGAAGAAGCCTTGGCCGACTGGCAGGCCGAAGCCTCACTGGCCGGTTTTTCGGGCACACTGCCGCCGGAAACCGT
TTTGCGCCACATCGGCCGTTTTCTCGACAGCGAAAGCGAAGCCGGCTTTTTGCGCAGCGGCATTACCATCTGCGGCATGG
TACCGATGCGCAGTCTGCCGTTTAAGGCCGTCTGTCTCTTGGGCTTGAACGACAAAACCTTCCCGCGCAACACCAAAGCC
GCCGCCTTCGACCTGATTGCGCAACACCCGCGCGCCGGCGACCGCGCCCGCCGCGACGACGACCGCTACCTGTTTCTCGA
AGCCCTGATGAGCGCGCGCGAACATCTTTATCTGTCCTACATCGGCCGCAGCATACGCAACAACGACGAACTCGCCCCCT
CGCCGCTGGTCAGCGAACTGGCCGACACGCTGGACAGTATGTGCGGCCACAGCAGCGGCACTTGGCAGAAACAGCTTATC
GAACAGCACCCGCTGCAACCCTTTTCCGCACGCTATTTCCAAAACGGCCCGCTCATCAGCAGCCGCAGCGATTATGCGCA
GGCTCGCCAAAGGCCGTCTGAAACCGCCCCGTTTTTCACGCCGCCGGAAAACGGCGAGGACGCACCAAGCGGCAAACCGC
CCGTCATCCGTCAGGCCGACCTGATCGAATTCTGGCAAAACCCGCCGCGCTACTGGCTGCGCCACCGTCTCGACTGGCGC
GCCCCGTGGCACGGCAGCGACAGCGAGGCCGCCGAACCCTTCGAGCCGCCGCAGGCCGATGCCGTGGCCGATGCCTACAC
CGAAGCCCGCCGCCGCCATCTCGACTTTGCCACGGCCGCCGAACCGCTGCACGCCCGTTCGCAACTGCCCGAAGCCGAAT
TGGGCAAACTGTGGCAGCAACAATACGAAGCCCAAGCCCGCCGTCTCGACGGCCGCCTGCTCTCAGCCGCCCCCCTGCCC
GACACCTCCTACCGCCTGCATATCGGCGGCATGATTCTCGAAGGATCGCTCGACAGCCTCACCGCCGAAGGCCGCATCAC
CACCGGCCGCGAAAGCACCGCCCATTTCATTGCCCGCCTGCTGCAACACCTGATTCTGAATGCCGTGCGCCCGCAAAATA
TGGCACATTTTGCCGGCCATCATCTGACTCTCGGCAAAGAAACCGCCACATTCACCGCCCTGCCCGATGCCGGTACGGCC
GCCGACCTGCTCGTACCGTGGCTCGATTATTACCGCCAAGGACAAATCCGTCCGCTGCCTTTTGTTCCGCACACCGCCTT
GAAAGCCGCCCAAGCCTTTATCAAACCGGAAAGCAAAAGCGGCAAAACACCCGAAGAACGCCTGAATGCCGCCGCCCACC
AAAGCTATTTCGGCCGCAACAGCGGTCAAACCGCCCGTGCCGACTATCCCGAAAACGCCACCGCCTTCGCCCGCCGAACC
CCGCCGCCCGACGACCCGCTGTTTGCCCGAATCCTGCACGACACCCTGATCCCCGCCCTGACCGCCTGCGGCGGTACGGA
CATACAGCCATCAAGGCCGTCTGAATAA

Domains

Predicted by InterproScan.

RecC C-terminal domain (RecC_C)

(775-992)

Exodeoxyribonuclease V, gamma subunit (Exonuc_V_gamma)

(2-315)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recC Neisseria gonorrhoeae strain FA1090

51.574

100

0.518