Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpX   Type   Regulator
Locus tag   ACEY2B_RS06280 Genome accession   NZ_CP169315
Coordinates   1290902..1292137 (-) Length   411 a.a.
NCBI ID   WP_012897750.1    Uniprot ID   -
Organism   Lactococcus lactis strain IFLLLBEK1     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1285902..1297137
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACEY2B_RS06250 (ACEY2B_06250) - 1285913..1287196 (-) 1284 WP_015426353.1 folylpolyglutamate synthase/dihydrofolate synthase family protein -
  ACEY2B_RS06255 (ACEY2B_06255) - 1287215..1287712 (-) 498 WP_015426352.1 NUDIX domain-containing protein -
  ACEY2B_RS06260 (ACEY2B_06260) folP 1287715..1288788 (-) 1074 WP_015426351.1 dihydropteroate synthase -
  ACEY2B_RS06265 (ACEY2B_06265) folE 1288785..1289834 (-) 1050 WP_015426350.1 GTP cyclohydrolase I FolE -
  ACEY2B_RS06270 (ACEY2B_06270) folB 1289914..1290264 (-) 351 WP_374787924.1 dihydroneopterin aldolase -
  ACEY2B_RS06275 (ACEY2B_06275) yihA 1290318..1290905 (-) 588 WP_010905788.1 ribosome biogenesis GTP-binding protein YihA/YsxC -
  ACEY2B_RS06280 (ACEY2B_06280) clpX 1290902..1292137 (-) 1236 WP_012897750.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  ACEY2B_RS06285 (ACEY2B_06285) - 1292378..1292884 (-) 507 WP_010905786.1 dihydrofolate reductase -
  ACEY2B_RS06290 (ACEY2B_06290) - 1293283..1293792 (+) 510 WP_010905785.1 tRNA (cytidine(34)-2'-O)-methyltransferase -
  ACEY2B_RS06295 (ACEY2B_06295) - 1293912..1294325 (+) 414 WP_015426348.1 hypothetical protein -
  ACEY2B_RS06300 (ACEY2B_06300) - 1294354..1295658 (-) 1305 WP_015426347.1 nucleobase:cation symporter-2 family protein -
  ACEY2B_RS06305 (ACEY2B_06305) - 1295707..1296300 (-) 594 WP_003132093.1 xanthine phosphoribosyltransferase -

Sequence

Protein


Download         Length: 411 a.a.        Molecular weight: 46024.89 Da        Isoelectric Point: 4.6053

>NTDB_id=939017 ACEY2B_RS06280 WP_012897750.1 1290902..1292137(-) (clpX) [Lactococcus lactis strain IFLLLBEK1]
MSNTQNPNIHCSFCGKSQDDVKKMIAGSDVYICNECIELSTRILEEELREEQDSEMLEVKTPKEMFDHLNEYVIGQEKAK
RALAVAVYNHYKRINFTASKIAEDIELQKSNILLIGPTGSGKTFLAQTLAKSLNVPFAIADATSLTEAGYVGEDVENILL
KLLQASDFNIERAERGIIYIDEIDKIAKKSENVSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPNQEMIQIDTKNI
LFIVGGAFDGIEEIVKQRLGEKIIGFGANNKKLNDDDSYMQEIIAEDIQKFGLIPEFIGRLPIVAALERLTEEDLIQILT
EPKNALIKQYKQLLLFDNVELEFEDEALMAIARKAIERKTGARGLRSIIEEVMMDIMFEVPSHEEITKVIINEAVVDGKA
EPQMIREAKKK

Nucleotide


Download         Length: 1236 bp        

>NTDB_id=939017 ACEY2B_RS06280 WP_012897750.1 1290902..1292137(-) (clpX) [Lactococcus lactis strain IFLLLBEK1]
ATGTCAAATACACAAAATCCAAATATACATTGTTCTTTCTGTGGAAAGAGTCAAGATGATGTAAAAAAAATGATTGCCGG
TTCAGACGTTTATATTTGTAATGAATGTATTGAACTTTCAACTCGAATCTTAGAAGAAGAATTAAGAGAAGAACAAGATT
CAGAAATGCTTGAAGTTAAAACACCTAAAGAAATGTTTGACCATTTAAATGAATATGTGATAGGTCAAGAAAAAGCAAAA
CGTGCACTTGCAGTTGCTGTTTATAATCATTACAAACGAATTAATTTTACAGCAAGTAAAATTGCTGAAGATATTGAACT
ACAAAAATCAAACATTCTATTAATCGGACCTACCGGTTCTGGTAAGACTTTTCTCGCTCAAACTTTAGCGAAATCACTCA
ATGTTCCGTTTGCGATTGCAGATGCGACAAGTTTAACTGAAGCTGGTTATGTTGGAGAAGACGTTGAAAATATTCTCTTA
AAACTTTTACAAGCGAGTGATTTCAATATTGAACGTGCAGAACGCGGAATTATCTATATCGATGAAATTGATAAAATAGC
TAAAAAATCTGAAAATGTATCAATTACTCGTGACGTTTCTGGGGAAGGTGTTCAACAAGCCCTTTTGAAAATTATTGAAG
GGACAGTAGCTAGTGTTCCACCACAAGGTGGACGTAAACATCCTAATCAAGAAATGATTCAAATTGATACCAAAAATATC
TTATTTATCGTTGGTGGAGCTTTTGACGGGATTGAAGAAATTGTCAAACAACGTTTAGGTGAAAAAATTATTGGTTTTGG
TGCCAATAATAAAAAATTAAATGACGATGATTCTTATATGCAAGAAATTATTGCCGAGGACATTCAAAAATTCGGATTAA
TCCCTGAATTTATTGGTCGTCTGCCAATTGTTGCTGCTTTGGAACGTTTGACCGAAGAGGATTTGATTCAAATTTTGACA
GAACCTAAAAATGCTTTGATTAAACAATATAAACAACTCCTTTTATTTGATAATGTTGAACTTGAATTTGAAGATGAAGC
CCTCATGGCAATTGCTAGAAAAGCAATTGAGCGCAAAACAGGAGCGCGTGGACTTCGTTCAATTATTGAGGAAGTAATGA
TGGATATCATGTTTGAAGTTCCAAGTCATGAAGAAATTACAAAAGTTATTATTAATGAAGCAGTTGTTGACGGAAAAGCT
GAGCCACAAATGATTCGAGAGGCCAAGAAAAAATGA

Domains

Predicted by InterProScan.

AAA domain (Cdc48 subfamily) (AAA_2)

(108-304)

ClpX C4-type zinc finger (zf-C4_ClpX)

(10-46)

C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small)

(310-388)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpX Streptococcus mutans UA159

76.808

97.567

0.749
  clpX Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

58.883

95.864

0.564