Detailed information    

insolico Bioinformatically predicted

Overview

Name   recG   Type   Machinery gene
Locus tag   ORY85_RS09645 Genome accession   NZ_CP145606
Coordinates   2009635..2011674 (+) Length   679 a.a.
NCBI ID   WP_274570925.1    Uniprot ID   -
Organism   Neisseria leonii strain 3986     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2004635..2016674
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ORY85_RS09615 (ORY85_09615) - 2005693..2005902 (+) 210 WP_274570934.1 hypothetical protein -
  ORY85_RS09620 (ORY85_09620) lpxK 2005899..2006903 (+) 1005 WP_274570933.1 tetraacyldisaccharide 4'-kinase -
  ORY85_RS09625 (ORY85_09625) - 2006944..2007126 (+) 183 WP_274570932.1 Trm112 family protein -
  ORY85_RS09630 (ORY85_09630) kdsB 2007123..2007887 (+) 765 WP_274570930.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  ORY85_RS09635 (ORY85_09635) - 2008051..2008749 (+) 699 WP_274570927.1 hypothetical protein -
  ORY85_RS09640 (ORY85_09640) adk 2008863..2009510 (+) 648 WP_274570926.1 adenylate kinase -
  ORY85_RS09645 (ORY85_09645) recG 2009635..2011674 (+) 2040 WP_274570925.1 ATP-dependent DNA helicase RecG Machinery gene
  ORY85_RS09650 (ORY85_09650) - 2012104..2013417 (-) 1314 WP_274570924.1 CitMHS family transporter -
  ORY85_RS09655 (ORY85_09655) - 2013755..2015284 (+) 1530 WP_274570923.1 class I SAM-dependent methyltransferase -
  ORY85_RS09660 (ORY85_09660) - 2015596..2016411 (-) 816 WP_274570922.1 undecaprenyl-diphosphate phosphatase -

Sequence

Protein


Download         Length: 679 a.a.        Molecular weight: 74393.05 Da        Isoelectric Point: 8.0883

>NTDB_id=939017 ORY85_RS09645 WP_274570925.1 2009635..2011674(+) (recG) [Neisseria leonii strain 3986]
MNPEYCKLLKINDAAAKRLAKLRLHTPWDAVLHLPLRYEDETHIMPIADAPVGVPCQVAGVVRHQEVQFKPRKQLVVQIA
DASGSVLYLRFIHFYPGHQKQLAVGRHIRAVGEIKRGFYGDEMIHPKIRDADSGGLAESLTPVYPTVSGLGQPTLRRIIQ
TALDSVSLHDTLPDELLGRLKLPPLAESLRLLHAPPPDFSIHQLSDGALPAWQRLKFDELLAQQLSMRLARQKRQSGAAE
PLRGTGVWTEKLTAALPFALTAAQQRVLAEIRADMAQPHPMHRLLQGDVGSGKTIVAALAALTAVEAGCQVAVMAPTEIL
AEQHEAKFRQWLEPLGLTVAWLSGSQRKKDKEANKAAVSDGLARIAVGTHALFQDDVAFQNLGLVIVDEQHRFGVAQRLA
LKNKGREVHQLMMSATPIPRTLAMSFFADLDVSVIDTLPPGRTPVRTRLVNSVRRAEVEGFVLNTCRKGHQAYWVCPLIE
ESETLQLQTAADTLAGLQAALPELNIGMVHGRMKPAEKAAVMAEFAAGRLNVLVATTVIEVGVDVPNAALMVIEHAERMG
LAQLHQLRGRVGRGAAESTCVLLFAEPLGETAKARLKVIYEHTDGFEIARQDLNIRGPGELLGARQSGAPMLRFADLTED
LHLLEQARETAPQLIAQRPDIVEAHLARWQGSREGYLGV

Nucleotide


Download         Length: 2040 bp        

>NTDB_id=939017 ORY85_RS09645 WP_274570925.1 2009635..2011674(+) (recG) [Neisseria leonii strain 3986]
ATGAATCCCGAATACTGCAAGCTGCTCAAAATCAACGATGCCGCCGCCAAACGGTTGGCCAAACTCCGTCTGCATACGCC
GTGGGACGCGGTGCTGCACCTGCCGCTGCGCTATGAAGACGAAACGCACATTATGCCGATTGCCGATGCGCCCGTGGGCG
TGCCGTGTCAGGTGGCGGGTGTGGTGCGGCATCAGGAAGTACAGTTCAAACCGCGAAAACAGCTGGTAGTGCAGATTGCC
GATGCGTCGGGCAGCGTGCTGTACCTGCGCTTTATCCATTTTTATCCCGGCCATCAGAAGCAGTTGGCGGTGGGGCGGCA
TATCCGCGCGGTGGGCGAAATCAAGCGCGGTTTTTACGGCGACGAGATGATTCACCCGAAAATCCGCGATGCCGACAGCG
GCGGTTTGGCCGAAAGCCTGACCCCCGTTTATCCCACCGTCAGCGGGCTGGGCCAGCCCACCCTGCGCCGCATCATTCAG
ACGGCCTTGGACAGCGTTTCCCTGCACGATACCCTGCCCGATGAGCTGTTGGGCCGTCTGAAACTGCCGCCGCTGGCCGA
GAGCCTGCGCCTGCTGCACGCGCCGCCGCCCGATTTCAGTATCCATCAGTTGAGCGACGGCGCATTGCCCGCGTGGCAGC
GGTTGAAGTTTGACGAACTTTTGGCGCAGCAGCTTTCCATGCGGCTGGCGCGGCAGAAACGGCAGAGCGGGGCGGCCGAA
CCGCTTCGCGGCACGGGTGTTTGGACGGAAAAACTGACCGCCGCCCTGCCGTTTGCGCTGACTGCCGCACAGCAGCGCGT
GTTGGCCGAAATCCGCGCCGATATGGCGCAGCCGCACCCGATGCACCGTCTGCTGCAAGGCGATGTCGGCAGCGGCAAGA
CCATTGTCGCCGCGCTGGCCGCGCTCACGGCCGTTGAAGCGGGCTGCCAAGTGGCGGTGATGGCGCCGACGGAAATTCTG
GCCGAACAGCACGAAGCCAAGTTCAGGCAATGGCTGGAACCGCTGGGTCTGACCGTGGCGTGGCTGTCGGGCAGCCAGCG
CAAAAAAGACAAAGAGGCCAACAAAGCCGCCGTTTCAGACGGCCTCGCCCGCATTGCCGTCGGTACCCACGCGCTGTTTC
AGGACGATGTCGCGTTTCAGAATCTGGGGCTGGTGATTGTGGACGAACAGCACCGCTTCGGCGTGGCGCAGCGGTTGGCG
TTGAAAAACAAAGGGCGGGAGGTGCACCAGCTGATGATGTCGGCCACACCCATTCCGCGCACGCTGGCGATGAGTTTTTT
TGCCGATTTGGACGTTTCCGTGATTGACACGCTGCCGCCGGGGCGCACGCCGGTGAGAACGCGTCTGGTAAACAGCGTGC
GGCGCGCCGAAGTGGAGGGTTTCGTGCTGAACACCTGCCGCAAAGGGCATCAGGCGTATTGGGTCTGCCCGCTGATTGAA
GAGAGCGAAACCCTGCAACTGCAAACCGCCGCCGACACGCTGGCCGGTTTGCAGGCGGCGTTGCCTGAGCTGAATATCGG
CATGGTGCACGGGCGCATGAAACCGGCCGAAAAAGCCGCCGTGATGGCGGAGTTTGCCGCAGGCCGTCTGAATGTGCTGG
TGGCGACCACCGTCATCGAAGTGGGTGTGGACGTGCCCAATGCCGCTTTGATGGTTATCGAACACGCCGAGCGCATGGGC
TTGGCGCAGCTGCACCAACTGCGCGGGCGGGTGGGGCGCGGCGCGGCCGAAAGCACCTGCGTGCTGCTGTTTGCCGAACC
CTTGGGCGAAACGGCCAAAGCGCGGCTCAAAGTGATATACGAACACACCGACGGTTTTGAAATCGCCCGTCAGGATTTGA
ACATACGCGGGCCGGGCGAGCTGCTCGGCGCGCGTCAAAGCGGCGCGCCGATGCTGCGTTTTGCCGACTTGACCGAAGAC
CTGCATCTGTTGGAACAGGCGCGCGAAACCGCGCCGCAGCTGATTGCGCAGCGGCCGGATATTGTCGAAGCCCATCTGGC
CAGATGGCAGGGCAGCCGGGAAGGCTATTTGGGCGTATAG

Domains

Predicted by InterproScan.

ATP-dependent DNA helicase RecG, domain 3, C-terminal (RecG_dom3_C)

(603-665)

DEAD/DEAH box helicase (DEAD)

(281-420)

Helicase conserved C-terminal domain (Helicase_C)

(466-574)

RecG wedge domain (RecG_wedge)

(11-165)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recG Neisseria meningitidis strain C311

82.474

100

0.825