Detailed information    

insolico Bioinformatically predicted

Overview

Name   recB   Type   Machinery gene
Locus tag   ORY85_RS05440 Genome accession   NZ_CP145606
Coordinates   1135421..1139029 (+) Length   1202 a.a.
NCBI ID   WP_274572009.1    Uniprot ID   -
Organism   Neisseria leonii strain 3986     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1130421..1144029
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ORY85_RS05420 (ORY85_05420) - 1130926..1131873 (+) 948 WP_274572720.1 LysR substrate-binding domain-containing protein -
  ORY85_RS05425 (ORY85_05425) mutL 1131988..1133892 (+) 1905 WP_338577748.1 DNA mismatch repair endonuclease MutL -
  ORY85_RS05430 (ORY85_05430) miaA 1133906..1134865 (+) 960 WP_274572007.1 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA -
  ORY85_RS05435 (ORY85_05435) - 1134903..1135424 (+) 522 WP_274572008.1 RDD family protein -
  ORY85_RS05440 (ORY85_05440) recB 1135421..1139029 (+) 3609 WP_274572009.1 exodeoxyribonuclease V subunit beta Machinery gene
  ORY85_RS05445 (ORY85_05445) - 1139073..1139612 (+) 540 WP_274572010.1 isochorismatase family protein -
  ORY85_RS05450 (ORY85_05450) tilS 1139942..1141282 (-) 1341 WP_274572011.1 tRNA lysidine(34) synthetase TilS -
  ORY85_RS05455 (ORY85_05455) - 1141581..1142540 (-) 960 WP_274572012.1 acetyl-CoA carboxylase carboxyltransferase subunit alpha -
  ORY85_RS05460 (ORY85_05460) - 1142777..1143175 (+) 399 WP_274572013.1 RNA-binding S4 domain-containing protein -

Sequence

Protein


Download         Length: 1202 a.a.        Molecular weight: 133684.50 Da        Isoelectric Point: 6.6660

>NTDB_id=939008 ORY85_RS05440 WP_274572009.1 1135421..1139029(+) (recB) [Neisseria leonii strain 3986]
MTAQAFDPLDIPIQGTNLIEASAGTGKTYGIAALFSRLIVLEQMPVESVLVVTFTNAATAELKNRLRARLAEMLAVLEAV
PQAADDPAALAEYCRSRHEGDDFLPQILHKALQNEAQNRVILRLKAALSQFDNAAIYTIHGFCQRILRDYAFWCESPFDI
ELADNHDRLLLTAAQDFWRKRVAADPVTAQAVFSARLTPQTLLAGLRRHIGTPALDFRRPEPADGRARADALACWQQVQP
QLAQLETLFWQVHPQLKANIYQKATFERIFAALRQTPPHQLPPAEKLDKFREEDLRAGLKKNADIAAGTVNSLNVLGRLH
TRLQQAAQEDENILILLSQDFLTHLRQTLTAGKNRRRERTFDDLLADVHRALTELPQAAALAAVLARNWQAALIDEFQDT
DPQQYAVFERIFVAHGRPLFLVGDPKQAIYRFRGADIHAYLYAAARAGRRYTLTRNFRSHHALTGSINHLFRQKHRPFIL
ADIPYPEVAAARQNSRLHPEPPAFTVRWLHGRDNEPANKAVLDTRAAEYCADEIAAQLNQGAAGRLNIVSGSGSRPLAPG
DIAVLVRNRSQAAALADALKKRRVQSVMIRKDSVFHTAEAAALAALLQWWLNASHTDLLRFVLAGPLFKRSADELAALNE
NEAQISAYITAADHAVELWQKHGIYTALQYFSGRCGLETGLLACGDERALTNYLQLAELLAAEDEHGRPSAALAEWLNRQ
IQTASDSDEHMLRLESDEALVKIITMHAAKGLQYPVVYCPFLWSVQAAQNDGWQVLQSAGRRELLAPSQLDAAAQEQIGA
DLLGEELRLFYVALTRAEEQLIVYAAADRQTAHHPIAHLLEGTPDTPPAETAKSYRAEKDTAAMLRRNWLRLMENAPEDT
SFAWYDTPPEPAVYTPPQSGQADGFTAREFAPRPFEAVRQTSFTALTRRREAAAPDEWHSRIDPGETAAGTPPDTPDPDS
RDAEPANGMAAFPRGIQAGLCLHDILETFDFRRPAAEQQAHAAACLAKHRYEADWLPVLLPMLDAVGCTTLNPQGVSLSS
LPPEKRLPEMGFVMHAHDFSPDRVRRALAAAGLTETCLNAAAALDFDTVRGFLNGFIDMTCMSGSSEVCIIDYKSNHLGN
HAADYRTAALNEAVAHHHYYFQAWIYAVAAARYLHIRRYPLHTVRIRYLFLRGLDGTGNGVWQWDIPAAALTPWLEQTHN
PR

Nucleotide


Download         Length: 3609 bp        

>NTDB_id=939008 ORY85_RS05440 WP_274572009.1 1135421..1139029(+) (recB) [Neisseria leonii strain 3986]
ATGACCGCCCAAGCCTTCGACCCGCTCGATATTCCGATTCAGGGAACCAACCTGATCGAAGCCTCCGCCGGCACCGGCAA
AACTTACGGCATCGCCGCCCTGTTTTCCCGCCTGATTGTGCTGGAACAGATGCCGGTAGAGAGCGTGCTGGTGGTTACCT
TTACCAACGCCGCCACCGCCGAACTGAAAAACCGTCTGCGCGCGCGGCTGGCCGAAATGCTTGCGGTATTGGAAGCCGTG
CCGCAGGCTGCGGATGACCCCGCCGCCTTGGCCGAATACTGCCGAAGCCGCCATGAAGGCGATGATTTTCTGCCGCAAAT
CCTGCACAAAGCCTTGCAGAATGAAGCGCAAAACCGCGTGATTCTGCGCCTGAAAGCCGCGCTGTCCCAGTTCGACAATG
CCGCCATCTACACCATTCACGGTTTCTGCCAGCGCATTTTGCGCGACTATGCCTTTTGGTGCGAATCGCCTTTCGACATC
GAGCTGGCCGACAACCACGACCGCCTGCTGCTGACGGCGGCACAAGACTTCTGGCGCAAACGCGTTGCCGCCGACCCCGT
AACCGCACAGGCGGTTTTCAGCGCACGGCTGACCCCGCAAACCCTGCTGGCCGGACTGCGCCGCCATATCGGCACGCCCG
CCCTCGATTTCAGACGGCCTGAACCGGCCGACGGCCGCGCCCGTGCCGATGCCCTCGCCTGCTGGCAGCAAGTGCAGCCG
CAACTGGCGCAGCTGGAAACCCTGTTTTGGCAGGTTCACCCCCAACTCAAAGCCAATATCTACCAAAAAGCCACGTTCGA
ACGCATCTTCGCCGCTTTACGGCAAACCCCGCCGCACCAACTGCCGCCTGCCGAAAAACTGGACAAATTCCGTGAAGAGG
ATTTGCGGGCCGGTTTGAAAAAAAATGCCGACATCGCCGCCGGAACTGTAAACTCCCTGAACGTTCTGGGCCGTCTGCAC
ACCCGGCTGCAACAGGCCGCACAGGAAGACGAAAACATTCTGATTCTGCTGTCGCAGGATTTTCTGACCCATCTGCGCCA
AACCTTGACCGCCGGGAAAAACCGCCGCCGCGAGCGTACATTTGACGACTTATTGGCCGATGTCCACCGCGCCCTGACCG
AGCTGCCGCAAGCAGCCGCACTCGCTGCCGTACTTGCCCGAAACTGGCAGGCCGCCTTAATCGACGAATTTCAAGACACC
GACCCGCAGCAATACGCCGTTTTCGAACGGATTTTTGTCGCACACGGCCGGCCGCTGTTTCTGGTGGGCGACCCCAAACA
GGCCATCTACCGCTTTCGCGGCGCGGATATCCATGCCTATCTGTATGCCGCCGCCCGAGCCGGCCGCCGCTACACGCTGA
CCCGCAATTTCCGCAGCCATCACGCGCTGACCGGGAGCATCAACCATCTGTTCCGCCAAAAACACCGCCCGTTTATTCTG
GCCGACATTCCCTATCCCGAAGTGGCGGCCGCACGGCAGAACAGCCGCCTGCACCCCGAACCGCCCGCTTTCACCGTGCG
CTGGCTGCACGGCAGGGACAATGAACCGGCCAACAAAGCCGTTCTGGACACCCGCGCGGCAGAATATTGCGCCGACGAAA
TCGCCGCACAGCTCAATCAAGGCGCGGCAGGCCGTCTGAATATCGTCAGCGGCAGCGGTTCCCGCCCGCTCGCGCCCGGC
GACATCGCCGTTTTGGTGCGCAACCGCAGTCAGGCCGCAGCGCTGGCCGATGCCTTGAAAAAACGGCGTGTCCAAAGCGT
GATGATCCGCAAAGATTCCGTTTTCCATACCGCCGAAGCCGCAGCACTGGCCGCGCTGCTGCAATGGTGGCTCAACGCTT
CGCACACCGACCTGCTGCGTTTTGTGCTGGCCGGACCGCTGTTCAAACGCAGCGCGGACGAACTGGCCGCGCTCAACGAA
AACGAAGCGCAGATCAGTGCCTATATCACGGCTGCCGACCACGCCGTCGAGCTGTGGCAGAAGCACGGCATTTACACCGC
CCTGCAATATTTCTCCGGCCGGTGCGGCCTGGAAACGGGGCTGTTGGCCTGCGGCGACGAACGCGCGCTCACCAATTATC
TGCAATTGGCCGAACTCTTGGCCGCCGAAGACGAACACGGCCGCCCGTCCGCCGCACTGGCCGAATGGCTCAACCGGCAG
ATTCAGACGGCCTCCGACAGCGACGAACACATGCTGCGGCTGGAAAGCGACGAAGCCTTGGTGAAAATCATCACCATGCA
CGCGGCCAAAGGTTTGCAGTATCCCGTGGTGTACTGCCCGTTTCTGTGGTCGGTACAGGCTGCGCAAAACGACGGCTGGC
AGGTGCTGCAATCGGCCGGCCGCCGCGAACTGCTCGCCCCGTCCCAACTGGATGCCGCCGCGCAGGAACAAATCGGCGCC
GATCTGCTGGGCGAAGAACTGCGGCTGTTTTATGTCGCCCTCACCCGCGCCGAAGAGCAATTAATCGTGTATGCGGCGGC
CGACCGCCAAACCGCACACCACCCGATCGCCCACCTGCTCGAAGGCACGCCCGATACCCCGCCGGCCGAAACCGCCAAAA
GCTACCGTGCGGAAAAAGACACCGCCGCCATGCTGCGCCGAAACTGGCTGCGCCTGATGGAAAACGCGCCCGAAGACACA
TCGTTCGCCTGGTACGACACCCCGCCCGAACCCGCAGTTTATACACCGCCGCAAAGCGGACAGGCAGACGGCTTCACCGC
GCGGGAATTTGCACCGCGCCCGTTTGAAGCTGTCCGCCAAACCAGCTTTACCGCCCTCACCCGCCGCCGCGAAGCGGCCG
CACCGGACGAATGGCACAGCCGCATCGACCCGGGCGAAACCGCTGCCGGCACGCCGCCCGACACTCCGGATCCGGACAGC
CGCGACGCTGAACCTGCAAACGGTATGGCCGCCTTCCCGCGCGGCATACAGGCCGGCCTGTGCCTGCACGACATTCTGGA
AACCTTCGATTTCAGACGGCCTGCCGCCGAACAGCAGGCCCATGCGGCCGCCTGTCTGGCGAAACACCGCTATGAAGCGG
ATTGGCTGCCGGTTTTACTGCCCATGCTCGATGCCGTCGGCTGCACCACCCTCAACCCGCAGGGCGTGAGCCTGAGCAGC
CTGCCGCCGGAAAAACGCCTGCCCGAAATGGGTTTTGTCATGCACGCGCACGACTTTTCGCCCGACCGGGTGCGCCGCGC
GCTGGCAGCGGCCGGTTTGACCGAAACCTGCCTGAATGCGGCGGCCGCACTCGATTTCGACACGGTGCGCGGTTTTCTCA
ACGGCTTTATCGACATGACCTGCATGAGCGGCAGCAGCGAAGTGTGCATCATCGACTACAAATCCAACCATCTGGGCAAC
CATGCCGCCGACTACCGCACCGCCGCACTGAATGAAGCCGTGGCACACCACCACTATTACTTTCAGGCTTGGATTTACGC
CGTGGCCGCCGCCCGCTATCTGCATATCCGCCGCTACCCGCTGCACACCGTGCGTATCCGCTATCTTTTCCTGCGCGGGC
TGGACGGTACGGGCAACGGCGTGTGGCAGTGGGACATTCCCGCCGCCGCCCTGACACCGTGGCTTGAACAGACGCACAAT
CCCCGCTAA

Domains

Predicted by InterproScan.

UvrD-like helicase C-terminal domain (UvrD_C)

(704-825)

UvrD-like helicase C-terminal domain (UvrD_C)

(451-638)

UvrD/REP helicase N-terminal domain (UvrD-helicase)

(11-444)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recB Neisseria gonorrhoeae strain FA1090

52.037

100

0.521