Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   ORY85_RS05105 Genome accession   NZ_CP145606
Coordinates   1057601..1058977 (+) Length   458 a.a.
NCBI ID   WP_274571044.1    Uniprot ID   -
Organism   Neisseria leonii strain 3986     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1052601..1063977
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ORY85_RS05075 (ORY85_05075) dnaB 1052784..1054190 (-) 1407 WP_274571050.1 replicative DNA helicase -
  ORY85_RS05080 (ORY85_05080) - 1054375..1054956 (+) 582 WP_274571049.1 superoxide dismutase -
  ORY85_RS05085 (ORY85_05085) - 1054946..1055368 (+) 423 WP_274571048.1 hypothetical protein -
  ORY85_RS05090 (ORY85_05090) erpA 1055953..1056291 (-) 339 WP_274571047.1 iron-sulfur cluster insertion protein ErpA -
  ORY85_RS05095 (ORY85_05095) - 1056399..1057085 (-) 687 WP_274571046.1 helix-turn-helix transcriptional regulator -
  ORY85_RS05100 (ORY85_05100) - 1057267..1057536 (+) 270 WP_274571045.1 hypothetical protein -
  ORY85_RS05105 (ORY85_05105) radA 1057601..1058977 (+) 1377 WP_274571044.1 DNA repair protein RadA Machinery gene
  ORY85_RS10585 - 1059308..1059481 (+) 174 WP_367575887.1 topoisomerase C-terminal repeat-containing protein -
  ORY85_RS05110 (ORY85_05110) putA 1059716..1063312 (-) 3597 WP_274571043.1 bifunctional proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase PutA -

Sequence

Protein


Download         Length: 458 a.a.        Molecular weight: 49068.60 Da        Isoelectric Point: 7.4030

>NTDB_id=939007 ORY85_RS05105 WP_274571044.1 1057601..1058977(+) (radA) [Neisseria leonii strain 3986]
MAKAPKVIYQCSGCGGTAVKWQGRCPHCGEWNTLQEQAAVPENKNVRFQSWAADASQVQALSAVSAQEVPRRATGMGELD
RVLGGGLVRGAVILLGGDPGIGKSTLLLQTLAKMAGSHTVLYISGEESAQQVALRAQRLELPTDGVDLLAEIRMEAIAAA
LKNHAPDVVVIDSIQTMYSDQITSAPGSVSQVRECAAQLTRMAKQMNIAIILVGHVTKDGAIAGPRVLEHMVDTVLYFEG
DQHSNYRMIRAIKNRFGAANELGVFAMTEHGLKGVSNPSAIFLASYRDDVPGSCVLVTQEGSRPLLVEIQALVDDAHGFT
PKRLTVGLEQNRLAMLLAVLNRHAGIACFDQDVFLNAVGGVKISEPAADLAVILAMLSSFRNRPLPEKMVAFGEIGLSGE
VRPVARGQERLKEAEKLGFKCAIVPKANLPRNPQEFPGLKIFGVSSLQEAVDICRHNG

Nucleotide


Download         Length: 1377 bp        

>NTDB_id=939007 ORY85_RS05105 WP_274571044.1 1057601..1058977(+) (radA) [Neisseria leonii strain 3986]
ATGGCAAAAGCACCCAAAGTCATTTACCAGTGCAGCGGATGCGGCGGAACGGCCGTAAAATGGCAGGGCAGATGCCCGCA
TTGCGGCGAATGGAATACCCTGCAAGAGCAGGCTGCCGTACCGGAAAACAAAAACGTGCGTTTCCAGTCTTGGGCGGCCG
ATGCTTCGCAGGTTCAGGCTTTATCTGCCGTCAGCGCACAAGAAGTACCCCGCCGCGCTACCGGTATGGGGGAACTGGAC
CGAGTACTCGGCGGCGGTTTGGTACGCGGTGCGGTCATTTTACTCGGCGGCGACCCCGGCATCGGCAAATCCACCCTGCT
GCTGCAAACATTGGCCAAAATGGCAGGCAGCCACACAGTACTCTATATTTCCGGTGAAGAATCGGCCCAGCAGGTCGCAT
TGCGCGCGCAACGGCTGGAACTGCCCACCGACGGCGTCGATCTGTTGGCAGAAATCCGCATGGAAGCTATTGCTGCCGCA
TTGAAAAACCATGCTCCCGATGTGGTAGTCATTGATTCGATACAGACCATGTATTCCGATCAGATAACCTCCGCACCCGG
CTCCGTTTCACAAGTCCGCGAATGCGCCGCCCAACTGACCCGCATGGCCAAACAGATGAATATCGCCATAATTTTGGTCG
GCCACGTAACTAAAGACGGCGCCATCGCAGGCCCCCGCGTATTGGAACATATGGTCGATACCGTACTGTATTTCGAGGGC
GACCAGCACTCCAACTACCGCATGATACGCGCCATTAAAAACCGCTTCGGTGCAGCCAATGAATTGGGGGTGTTCGCCAT
GACCGAACACGGACTCAAAGGTGTATCCAACCCTTCCGCCATTTTTCTGGCCAGCTACCGCGACGATGTTCCCGGCTCCT
GCGTTCTGGTTACACAGGAAGGATCGCGTCCGCTGCTGGTGGAAATTCAGGCACTGGTTGATGATGCGCACGGCTTTACC
CCCAAACGCCTGACGGTAGGCTTAGAACAAAACCGCCTCGCCATGCTGCTGGCCGTACTCAACCGCCATGCCGGCATTGC
CTGTTTTGATCAGGACGTTTTTCTGAACGCAGTAGGCGGGGTTAAAATCAGCGAACCGGCCGCCGATTTGGCCGTTATTC
TGGCCATGCTGTCCAGCTTCCGCAACCGCCCGCTGCCGGAAAAAATGGTCGCTTTCGGCGAAATCGGCCTCAGCGGCGAA
GTCCGCCCTGTCGCACGGGGGCAGGAGCGGCTCAAAGAAGCCGAAAAACTGGGTTTCAAATGCGCTATTGTCCCCAAGGC
CAATCTGCCGCGCAATCCTCAGGAATTTCCCGGCCTGAAAATTTTCGGTGTTTCCAGTCTCCAAGAAGCCGTCGATATTT
GCCGGCACAACGGCTGA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(79-220)

Subunit ChlI of Mg-chelatase (ChlI)

(361-428)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(9-36)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

48.904

99.563

0.487
  radA Streptococcus pneumoniae Rx1

47.903

98.908

0.474
  radA Streptococcus pneumoniae D39

47.903

98.908

0.474
  radA Streptococcus pneumoniae R6

47.903

98.908

0.474
  radA Streptococcus pneumoniae TIGR4

47.903

98.908

0.474
  radA Streptococcus mitis SK321

47.903

98.908

0.474
  radA Streptococcus mitis NCTC 12261

47.682

98.908

0.472