Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD   Type   Machinery gene
Locus tag   ORY85_RS02710 Genome accession   NZ_CP145606
Coordinates   554458..556221 (+) Length   587 a.a.
NCBI ID   WP_274571438.1    Uniprot ID   -
Organism   Neisseria leonii strain 3986     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 549458..561221
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ORY85_RS10620 - 549525..550493 (-) 969 Protein_525 ABC-F family ATP-binding cassette domain-containing protein -
  ORY85_RS02685 (ORY85_02685) - 550460..550849 (-) 390 WP_274571433.1 MerR family DNA-binding protein -
  ORY85_RS02690 (ORY85_02690) - 551069..552094 (+) 1026 WP_274571434.1 cation diffusion facilitator family transporter -
  ORY85_RS02695 (ORY85_02695) - 552327..552932 (+) 606 WP_274571435.1 DUF4230 domain-containing protein -
  ORY85_RS02700 (ORY85_02700) - 553003..553743 (-) 741 WP_274571436.1 MarC family protein -
  ORY85_RS02705 (ORY85_02705) - 553772..554293 (-) 522 WP_274571437.1 hypothetical protein -
  ORY85_RS02710 (ORY85_02710) recD 554458..556221 (+) 1764 WP_274571438.1 exodeoxyribonuclease V subunit alpha Machinery gene
  ORY85_RS02715 (ORY85_02715) - 556166..556360 (-) 195 WP_274571439.1 hypothetical protein -
  ORY85_RS02720 (ORY85_02720) rep 556362..558368 (-) 2007 WP_274571440.1 DNA helicase Rep -
  ORY85_RS02725 (ORY85_02725) grxD 558449..558757 (-) 309 WP_274571441.1 Grx4 family monothiol glutaredoxin -
  ORY85_RS02730 (ORY85_02730) - 558833..559717 (-) 885 WP_274571442.1 DMT family transporter -
  ORY85_RS02735 (ORY85_02735) - 559824..560792 (-) 969 WP_274571443.1 class 1 fructose-bisphosphatase -

Sequence

Protein


Download         Length: 587 a.a.        Molecular weight: 63006.28 Da        Isoelectric Point: 7.2036

>NTDB_id=939001 ORY85_RS02710 WP_274571438.1 554458..556221(+) (recD) [Neisseria leonii strain 3986]
MSSGEWAVQAAQAANDFLARHAPQAAEICAPFVRRLFVEWQNGHSYLDLTEAERLQLAAAVPIVGMRGDTPLQLWGRRLF
LGRVWQLERDLASELLRLSAVVLPQPDEAAAAARLAAWFPDAGSRAQKEAAALALLQPLMLITGGPGTGKTTTVAKLLAL
LCDGREKPPRIALAAPTGKAAAHMARALHQALARFEPSETVRSHLAALSGQTVHRLLKLRPPQMLPAFDGSRPLPLDILV
VDEASMLDMSLLLSLLRAVPTGCRVVLLGDENQLPSVGAGAVLSALSQPTVLDGETAAVWQRLLQTAQPPAVQTAAEPPP
LASQIMRLTVSHRFGDDSGLGCLARAVAAGEADCAWAQFARFPQELAAGEAVLESQVPAFYAAQTAYWQAVDGGSAEAAF
AHQADMVMLTARRQDAAAFNAAYRRYLQQVRGVAADQVWFAGQMIMVEENHYPLGVFNGDIGLVLPDAQGQLAAYFPSAQ
GLRTLALSRLPACGDAFALTVHKSQGSEYREVWLYAPDAVSDGLTRALLYTAVTRARERFRFIGGESVLRRACLNNETRR
TALRALLAKLSAEQNTTARPTPPPPAD

Nucleotide


Download         Length: 1764 bp        

>NTDB_id=939001 ORY85_RS02710 WP_274571438.1 554458..556221(+) (recD) [Neisseria leonii strain 3986]
ATGAGCAGCGGAGAATGGGCGGTACAGGCGGCACAGGCCGCAAATGATTTTCTCGCACGGCACGCGCCGCAGGCAGCGGA
GATTTGCGCGCCGTTTGTCCGCCGTCTGTTTGTCGAATGGCAGAACGGGCACAGTTATCTCGATTTGACGGAAGCGGAAC
GGTTGCAGCTGGCCGCTGCGGTGCCTATTGTCGGTATGCGCGGCGACACGCCGTTGCAGTTGTGGGGACGGCGGCTGTTT
TTGGGACGGGTGTGGCAGCTGGAACGCGATTTGGCATCGGAGCTGCTGCGCCTTTCTGCTGTGGTGTTGCCGCAGCCCGA
CGAAGCGGCGGCTGCGGCGCGTTTGGCCGCATGGTTTCCCGATGCGGGCAGCCGTGCGCAAAAAGAAGCGGCGGCTCTGG
CATTATTACAGCCGCTGATGCTGATTACCGGCGGGCCGGGAACGGGGAAAACGACGACAGTGGCGAAACTGCTGGCCTTG
TTGTGCGACGGCAGAGAAAAGCCGCCGCGCATTGCCTTGGCCGCGCCGACGGGCAAGGCCGCCGCGCATATGGCGCGCGC
CCTGCATCAGGCGCTGGCGCGTTTTGAGCCGTCCGAAACGGTGCGCAGCCATCTGGCCGCTTTGTCGGGGCAGACGGTAC
ACCGCCTACTCAAACTGCGTCCGCCGCAAATGCTGCCCGCATTTGACGGCAGCCGGCCGCTGCCGCTGGATATTCTGGTG
GTGGACGAAGCCTCGATGCTGGATATGTCGTTACTGCTGTCGCTGCTGCGTGCCGTGCCGACAGGCTGCCGCGTGGTATT
GCTGGGCGATGAAAACCAGCTGCCTTCGGTGGGCGCGGGTGCGGTATTGTCCGCGCTTTCGCAACCCACAGTGTTGGACG
GCGAAACCGCCGCTGTGTGGCAGCGTTTGCTGCAAACCGCCCAACCGCCCGCTGTTCAGACGGCCGCTGAACCGCCGCCG
CTGGCTTCGCAGATTATGCGGCTGACGGTCAGCCACCGTTTCGGCGACGACAGCGGCCTGGGCTGTCTGGCGCGTGCCGT
GGCGGCAGGGGAGGCGGATTGTGCGTGGGCGCAGTTTGCCCGTTTCCCTCAGGAGTTGGCGGCAGGAGAGGCCGTCTTGG
AAAGCCAGGTTCCTGCTTTTTATGCCGCGCAGACGGCCTATTGGCAGGCGGTGGACGGGGGTAGCGCAGAAGCCGCCTTC
GCACATCAGGCCGATATGGTGATGCTGACGGCCAGACGGCAGGATGCGGCGGCGTTTAACGCGGCCTACCGGCGTTACCT
GCAACAGGTGCGCGGTGTGGCGGCCGATCAGGTTTGGTTTGCGGGTCAGATGATTATGGTGGAAGAAAATCATTATCCGC
TCGGAGTGTTTAACGGCGACATCGGCTTGGTGCTGCCCGACGCGCAGGGACAATTGGCGGCTTATTTCCCGTCGGCGCAG
GGGCTGCGCACGCTCGCGCTCAGCCGTCTGCCTGCCTGCGGCGATGCGTTTGCGCTGACGGTGCATAAAAGTCAGGGTTC
GGAATACCGCGAAGTGTGGCTGTATGCGCCCGATGCCGTTTCAGACGGCCTCACGCGCGCGCTGCTGTATACGGCGGTTA
CGCGTGCGCGCGAACGTTTCCGCTTTATCGGCGGCGAAAGCGTATTGCGTCGTGCCTGCCTGAACAATGAAACACGGCGT
ACCGCCTTGCGCGCGCTGTTGGCCAAACTCAGCGCAGAACAAAATACCACAGCGCGGCCAACCCCGCCGCCGCCAGCAGA
TTGA

Domains

Predicted by InterproScan.

AAA domain (AAA_30)

(124-288)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(496-539)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD Neisseria gonorrhoeae strain FA1090

55.282

96.763

0.535