Detailed information    

insolico Bioinformatically predicted

Overview

Name   cclA/cilC   Type   Machinery gene
Locus tag   ACEY2B_RS01310 Genome accession   NZ_CP169315
Coordinates   256601..257266 (-) Length   221 a.a.
NCBI ID   WP_015427122.1    Uniprot ID   -
Organism   Lactococcus lactis strain IFLLLBEK1     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 251601..262266
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACEY2B_RS01290 (ACEY2B_01290) - 252092..253222 (+) 1131 WP_012898532.1 aminotransferase -
  ACEY2B_RS01295 (ACEY2B_01295) - 253414..254907 (+) 1494 WP_015427125.1 basic amino acid/polyamine antiporter -
  ACEY2B_RS01300 (ACEY2B_01300) - 254986..255477 (+) 492 WP_015427124.1 prolyl-tRNA synthetase associated domain-containing protein -
  ACEY2B_RS01305 (ACEY2B_01305) dinB 255556..256650 (+) 1095 WP_015427123.1 DNA polymerase IV -
  ACEY2B_RS01310 (ACEY2B_01310) cclA/cilC 256601..257266 (-) 666 WP_015427122.1 A24 family peptidase Machinery gene
  ACEY2B_RS01315 (ACEY2B_01315) - 257433..257879 (+) 447 WP_004254538.1 DNA starvation/stationary phase protection protein -
  ACEY2B_RS01320 (ACEY2B_01320) - 257961..258347 (-) 387 WP_374788137.1 rhodanese-like domain-containing protein -
  ACEY2B_RS01325 (ACEY2B_01325) - 258350..259321 (-) 972 WP_015427121.1 ROK family glucokinase -
  ACEY2B_RS01330 (ACEY2B_01330) - 259355..259576 (-) 222 WP_010906270.1 YqgQ family protein -
  ACEY2B_RS01335 (ACEY2B_01335) - 259768..260496 (+) 729 WP_015427120.1 LytTR family DNA-binding domain-containing protein -
  ACEY2B_RS01340 (ACEY2B_01340) - 260794..261120 (+) 327 WP_012898524.1 lactococcin 972 family bacteriocin -

Sequence

Protein


Download         Length: 221 a.a.        Molecular weight: 25592.78 Da        Isoelectric Point: 8.6924

>NTDB_id=938982 ACEY2B_RS01310 WP_015427122.1 256601..257266(-) (cclA/cilC) [Lactococcus lactis strain IFLLLBEK1]
MDILFIFVIGSIFGSFFGLIVDRIPLRKSIIFGRSHCDSCQQLLAYRDLIPIFSQICSGSHCRYCKSKIPYLYVFLEFSS
ALIFVLAWVNYLKPSQFLLIILSLILSAFDYRQHSFPFVIWFIFALSFILIFPLSPLFYFWLILAVLAEKFNLRVGSGDF
LWFFTASFSLTFLNEMLLLQIACSLGTIYYLITKKRAEIAFIPFLTIAYLMLLLGHQILSP

Nucleotide


Download         Length: 666 bp        

>NTDB_id=938982 ACEY2B_RS01310 WP_015427122.1 256601..257266(-) (cclA/cilC) [Lactococcus lactis strain IFLLLBEK1]
ATGGACATTTTATTTATATTTGTAATTGGAAGTATTTTTGGCTCATTTTTTGGCTTAATAGTTGACCGTATTCCACTAAG
AAAATCGATTATTTTTGGACGCTCACATTGTGATTCTTGTCAGCAACTTTTAGCCTATCGTGATCTAATTCCTATTTTTT
CTCAAATATGTTCTGGCTCACATTGCCGTTATTGTAAAAGTAAAATTCCATATTTATATGTTTTTTTGGAGTTCTCATCA
GCTTTAATTTTTGTTTTAGCTTGGGTAAATTATCTTAAACCTAGTCAATTTTTACTGATTATTCTTTCACTAATTTTATC
TGCTTTTGATTATCGTCAGCACAGTTTTCCTTTTGTTATCTGGTTTATTTTTGCACTCAGTTTTATTTTAATATTTCCTC
TTTCTCCCCTTTTCTATTTTTGGCTTATTTTAGCCGTCTTAGCTGAAAAATTCAATTTAAGAGTTGGCAGCGGTGATTTT
TTATGGTTTTTTACCGCTTCATTTTCTCTAACTTTCTTAAACGAAATGCTGCTCCTTCAAATTGCTTGTTCACTTGGTAC
CATTTATTATCTAATCACAAAAAAGCGAGCTGAAATTGCCTTCATCCCGTTTCTAACTATTGCATATCTAATGTTGCTTT
TGGGACACCAAATTCTGTCACCGTAA

Domains

Predicted by InterProScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(8-90)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cclA/cilC Streptococcus mitis SK321

36.53

99.095

0.362