Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   R9A00_RS06690 Genome accession   NZ_AP028376
Coordinates   1293205..1294173 (+) Length   322 a.a.
NCBI ID   WP_002874446.1    Uniprot ID   -
Organism   Campylobacter jejuni strain BCH-10927     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1288205..1299173
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R9A00_RS06665 (B10927_13130) cdsA 1289111..1289836 (-) 726 WP_002888102.1 phosphatidate cytidylyltransferase -
  R9A00_RS06670 (B10927_13140) - 1289845..1290183 (-) 339 WP_002852397.1 hypothetical protein -
  R9A00_RS06675 (B10927_13150) - 1290185..1291492 (-) 1308 WP_317729340.1 NFACT family protein -
  R9A00_RS06680 (B10927_13160) mobA 1291554..1292129 (+) 576 WP_002867312.1 molybdenum cofactor guanylyltransferase -
  R9A00_RS06685 (B10927_13170) pldA 1292126..1293119 (+) 994 Protein_1293 phospholipase A -
  R9A00_RS06690 (B10927_13180) ceuB 1293205..1294173 (+) 969 WP_002874446.1 ABC transporter permease Machinery gene
  R9A00_RS06695 (B10927_13190) ceuC 1294166..1295104 (+) 939 WP_002859639.1 iron chelate uptake ABC transporter family permease subunit -
  R9A00_RS06700 (B10927_13200) ceuD 1295101..1295856 (+) 756 WP_002858409.1 ABC transporter ATP-binding protein -
  R9A00_RS06705 (B10927_13210) ceuB 1295869..1296861 (+) 993 WP_317729341.1 enterochelin ABC transporter substrate-binding protein CeuB -
  R9A00_RS06715 (B10927_13220) - 1297087..1297641 (-) 555 WP_002884169.1 membrane protein -

Sequence

Protein


Download         Length: 322 a.a.        Molecular weight: 35455.37 Da        Isoelectric Point: 9.6678

>NTDB_id=93877 R9A00_RS06690 WP_002874446.1 1293205..1294173(+) (ceuB) [Campylobacter jejuni strain BCH-10927]
MFFKHILSLKVLIALLLFFGMISLFIGVISINVKDILNLNSTQLEIITLTRIPRLIAILLTGMSLSICGLIMQQLTQNKF
VSPTTAGTMDCAKFGILISLIFFAGASFFTQTIIASVFALLGSFIFIQILRKIKLKDVIFVPLIGLMFGGIISAITTFFA
YALNYIQNIQGWLQGSMANVMQGNYELLYISLPLFILAYFLAHKITIVGMGEDIALNLGISYNGILFLGLMIVSIITSLV
IVSVGIIPFLGLIIPNLVALYLGDNLRKNLIYIALCGALFLLVCDIISRLVIFPFEMPLSITTGVLGSLIFIFLLLKRKV
YA

Nucleotide


Download         Length: 969 bp        

>NTDB_id=93877 R9A00_RS06690 WP_002874446.1 1293205..1294173(+) (ceuB) [Campylobacter jejuni strain BCH-10927]
TTGTTTTTTAAGCATATATTGAGTTTAAAAGTGCTTATAGCTTTACTTTTATTCTTTGGAATGATAAGTTTATTTATAGG
AGTTATCAGTATCAATGTAAAAGATATTCTTAATCTTAACTCCACTCAACTAGAAATCATAACTCTCACAAGAATTCCTA
GACTTATAGCAATTTTACTCACAGGAATGAGTCTTAGTATATGCGGGCTTATCATGCAACAACTCACGCAAAATAAATTC
GTTTCCCCAACTACAGCAGGAACTATGGATTGTGCTAAATTTGGCATACTTATTTCTTTAATATTTTTTGCTGGAGCGTC
TTTTTTTACTCAAACTATCATTGCTTCTGTATTTGCACTTTTGGGTTCTTTTATATTTATCCAAATTTTAAGAAAAATCA
AACTCAAAGATGTGATTTTTGTACCTTTGATAGGCTTGATGTTTGGAGGCATTATTAGTGCTATAACTACTTTTTTTGCC
TATGCTTTAAATTATATACAAAATATCCAAGGCTGGTTACAAGGCAGTATGGCAAATGTTATGCAAGGAAATTATGAATT
ACTTTACATTTCTTTGCCACTTTTTATACTTGCTTATTTTTTAGCTCACAAAATCACCATAGTTGGCATGGGCGAAGATA
TAGCTTTAAATCTTGGAATTTCTTATAATGGGATATTATTTTTAGGCTTGATGATTGTAAGCATTATCACTAGCTTAGTG
ATTGTAAGCGTTGGAATTATCCCTTTTTTAGGGCTAATTATCCCAAATTTAGTAGCTCTTTATCTAGGTGATAATCTTAG
AAAAAATCTTATCTATATAGCACTTTGTGGAGCTTTGTTTTTACTTGTTTGCGATATCATTTCAAGACTTGTCATCTTTC
CTTTTGAAATGCCTTTAAGTATCACTACAGGTGTTTTAGGATCTTTAATCTTTATCTTTCTTTTGCTAAAAAGGAAAGTT
TATGCGTAA

Domains

Predicted by InterProScan.

FecCD transport family (FecCD)

(15-317)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

99.379

100

0.994

Multiple sequence alignment