Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGC/cglC   Type   Machinery gene
Locus tag   LBA42_RS08050 Genome accession   NZ_CP145437
Coordinates   1595585..1595908 (+) Length   107 a.a.
NCBI ID   WP_000738628.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain HAC 39-1996     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1590585..1600908
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LBA42_RS08025 (LBA42_08025) nagA 1590714..1591865 (+) 1152 WP_001134457.1 N-acetylglucosamine-6-phosphate deacetylase -
  LBA42_RS08030 (LBA42_08030) - 1592028..1593086 (+) 1059 WP_000649468.1 zinc-dependent alcohol dehydrogenase family protein -
  LBA42_RS08035 (LBA42_08035) - 1593237..1593602 (+) 366 WP_000286415.1 DUF1033 family protein -
  LBA42_RS08040 (LBA42_08040) comGA/cglA/cilD 1593678..1594619 (+) 942 WP_000249536.1 competence type IV pilus ATPase ComGA Machinery gene
  LBA42_RS08045 (LBA42_08045) comGB/cglB 1594567..1595583 (+) 1017 WP_078130737.1 competence type IV pilus assembly protein ComGB Machinery gene
  LBA42_RS08050 (LBA42_08050) comGC/cglC 1595585..1595908 (+) 324 WP_000738628.1 comG operon protein ComGC Machinery gene
  LBA42_RS08055 (LBA42_08055) comGD/cglD 1595871..1596305 (+) 435 WP_033606693.1 competence type IV pilus minor pilin ComGD Machinery gene
  LBA42_RS08060 (LBA42_08060) comGE/cglE 1596268..1596570 (+) 303 WP_000413382.1 competence type IV pilus minor pilin ComGE Machinery gene
  LBA42_RS08065 (LBA42_08065) comGF/cglF 1596533..1596994 (+) 462 WP_000250531.1 competence type IV pilus minor pilin ComGF Machinery gene
  LBA42_RS08070 (LBA42_08070) comGG/cglG 1596972..1597418 (+) 447 WP_001809944.1 competence type IV pilus minor pilin ComGG Machinery gene
  LBA42_RS08075 (LBA42_08075) - 1597521..1598113 (+) 593 Protein_1580 methyltransferase domain-containing protein -
  LBA42_RS08080 (LBA42_08080) comYH 1598174..1599127 (+) 954 WP_000345126.1 class I SAM-dependent methyltransferase Machinery gene
  LBA42_RS08085 (LBA42_08085) - 1599178..1600368 (+) 1191 WP_000167765.1 acetate kinase -
  LBA42_RS08090 (LBA42_08090) - 1600369..1600500 (+) 132 WP_000768904.1 hypothetical protein -
  LBA42_RS08095 (LBA42_08095) rnpA 1600517..1600888 (+) 372 WP_000739246.1 ribonuclease P protein component -

Sequence

Protein


Download         Length: 107 a.a.        Molecular weight: 12232.41 Da        Isoelectric Point: 9.8887

>NTDB_id=938718 LBA42_RS08050 WP_000738628.1 1595585..1595908(+) (comGC/cglC) [Streptococcus pneumoniae strain HAC 39-1996]
MKKMMTFLKKAKVKAFTLVEMLVVLLIISVLFLLFVPNLTKQKEAVNDKGKAAVVKVVESQAELYSLEKNEDASLRKLQD
DGRITEEQAKAYKEYHDKQNTSQIVKD

Nucleotide


Download         Length: 324 bp        

>NTDB_id=938718 LBA42_RS08050 WP_000738628.1 1595585..1595908(+) (comGC/cglC) [Streptococcus pneumoniae strain HAC 39-1996]
ATGAAAAAAATGATGACATTCTTGAAAAAAGCTAAGGTTAAAGCTTTTACATTGGTGGAAATGTTGGTGGTCTTGCTGAT
TATCAGCGTGCTTTTCTTGCTCTTTGTACCTAATCTGACCAAGCAAAAAGAAGCAGTCAATGACAAAGGAAAAGCAGCTG
TTGTTAAGGTGGTGGAAAGCCAGGCAGAACTTTATAGCTTGGAAAAGAATGAAGATGCTAGCCTAAGAAAGTTACAAGAC
GATGGACGCATCACGGAAGAACAGGCTAAAGCCTATAAAGAATACCATGATAAACAAAATACTAGTCAAATCGTTAAAGA
TTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(11-34)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGC/cglC Streptococcus mitis NCTC 12261

93.458

100

0.935
  comGC/cglC Streptococcus pneumoniae D39

94.175

96.262

0.907
  comGC/cglC Streptococcus pneumoniae R6

94.175

96.262

0.907
  comGC/cglC Streptococcus pneumoniae Rx1

94.175

96.262

0.907
  comGC/cglC Streptococcus pneumoniae TIGR4

93.204

96.262

0.897
  comGC/cglC Streptococcus mitis SK321

88.35

96.262

0.85
  comYC Streptococcus gordonii str. Challis substr. CH1

69.388

91.589

0.636
  comYC Streptococcus mutans UA140

64.211

88.785

0.57
  comYC Streptococcus mutans UA159

64.211

88.785

0.57
  comYC Streptococcus suis isolate S10

69.136

75.701

0.523
  comGC Lactococcus lactis subsp. cremoris KW2

54.639

90.654

0.495
  comGC Staphylococcus aureus MW2

48.837

80.374

0.393
  comGC Staphylococcus aureus N315

48.837

80.374

0.393
  comGC Latilactobacillus sakei subsp. sakei 23K

45.349

80.374

0.364