Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   R9A00_RS05935 Genome accession   NZ_AP028376
Coordinates   1138077..1138571 (+) Length   164 a.a.
NCBI ID   WP_002859279.1    Uniprot ID   -
Organism   Campylobacter jejuni strain BCH-10927     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1133077..1143571
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R9A00_RS05920 (B10927_11630) - 1134463..1135641 (-) 1179 WP_032586703.1 metal-dependent hydrolase -
  R9A00_RS05925 (B10927_11640) gpsA 1135651..1136547 (-) 897 WP_317729327.1 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase -
  R9A00_RS05930 (B10927_11650) gatB 1136544..1137962 (-) 1419 WP_002852902.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB -
  R9A00_RS05935 (B10927_11660) luxS 1138077..1138571 (+) 495 WP_002859279.1 S-ribosylhomocysteine lyase Regulator
  R9A00_RS05940 (B10927_11670) - 1138883..1139875 (+) 993 WP_002852878.1 isopenicillin N synthase family dioxygenase -
  R9A00_RS05945 (B10927_11680) - 1139886..1140656 (+) 771 WP_002855781.1 MetQ/NlpA family ABC transporter substrate-binding protein -
  R9A00_RS05950 (B10927_11690) metE 1140668..1142932 (+) 2265 WP_002852733.1 5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase -

Sequence

Protein


Download         Length: 164 a.a.        Molecular weight: 18212.25 Da        Isoelectric Point: 7.3250

>NTDB_id=93869 R9A00_RS05935 WP_002859279.1 1138077..1138571(+) (luxS) [Campylobacter jejuni strain BCH-10927]
MPLLDSFKVDHTKMPAPAVRLAKVMKTPKGDDISVFDLRFCIPNKDIMSEKGTHTLEHLFAGFMRDHLNSNSVEIIDISP
MGCRTGFYMSLIGTPDEKSVAKAWKAAMKDVLSVSDQSKIPELNIYQCGTCAMHSLDEAKQIAQKVLNLGISIMNNKELK
LENA

Nucleotide


Download         Length: 495 bp        

>NTDB_id=93869 R9A00_RS05935 WP_002859279.1 1138077..1138571(+) (luxS) [Campylobacter jejuni strain BCH-10927]
ATGCCATTATTAGACAGCTTTAAAGTTGACCATACTAAAATGCCAGCTCCTGCTGTGCGTTTAGCTAAAGTTATGAAAAC
ACCTAAGGGTGATGATATTAGCGTGTTTGATTTGCGTTTTTGCATACCAAATAAAGACATTATGAGCGAAAAAGGTACTC
ATACCTTAGAACATTTATTTGCAGGATTTATGAGAGATCATTTAAATTCAAATTCAGTTGAAATTATTGATATTTCACCT
ATGGGTTGTCGCACGGGTTTTTATATGAGTTTAATTGGAACACCAGATGAAAAAAGTGTTGCTAAAGCTTGGAAAGCAGC
TATGAAAGATGTTTTAAGCGTAAGCGATCAAAGCAAAATTCCTGAACTTAATATCTATCAATGCGGAACTTGCGCAATGC
ATTCTTTAGATGAAGCCAAACAAATTGCCCAAAAGGTTTTAAATCTAGGTATTAGCATAATGAATAACAAAGAATTAAAA
CTCGAGAATGCTTAA

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-154)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

72.671

98.171

0.713

Multiple sequence alignment